BAC Information

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BAC

Clone NameMSMg01-267C06
Chromosome6 (Build37)
Map Location 117,569,742 - 117,570,058
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267C06.T7 (MSMg01no267_c06.b1)MSMg01-267C06.TJ (MSMg01no267_c06.g1)
ACCAG407943AG407944
length736706
length of high quality
(start - end)
317 (45 - 361)327 (380 - 706)
definitionCHROMAT_FILE: MSMg01no267_c06.b1 PHD_FILE: MSMg01no267_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:07 2005CHROMAT_FILE: MSMg01no267_c06.g1 PHD_FILE: MSMg01no267_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCCTGAAATACAGACCTTAAAATCCCATCCAGTTTATGTCTATG
TTAACTGCCCTGTAGAAACCATGCTTCTACTGAACCAGCAGGCACCCCTT
GCCTGGCATGCCTGCACTGCAGCACACAGGGCTTAACTCTGGGTAGTTCT
GATGTCTTTTCTCCCTCAGCAGCTTGGATAGCACCCTCTGGTACTGAGAG
CTAGCCAGCAGCGATTGTGTCTCCTGCTAAGCTTGAGTGATTTCTCTAGG
TTCTGAGGCCAAAGTGTATGGGTAATTCAGCAGTGCAGACCTTGAAAATT
AAATGAAAAATTAANNATTTTATCCNANCCTNTTGCCTCATGTGTATGGG
TGCCTGCTTGTTTATCTGCGCACCATGAGAAAAAAAAGATGCCAGCAGAG
GTCAGAGATGGTACTGGGGCCCTGGAACTCAACTCTTCATATAGGTTCTG
GGAATTGAACTCATATTCTCCGGAAGATCAAGATTAACAAGTACCTTTTT
GTTTCCTTTAAGGCTTTTTTTTTTAAAAAAGATTTATTTATTTATTATAT
GTAAGTACACTGTAGCTGTCTTTAGACATCCCAGAAGAGGGCATCAGATC
TCATGTATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGATCTCAGGA
CCTTCAGAAGAGCATTCCCTGCCCCTTATCTGCTGA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTGTGCTTTGGCATCCTGTGCATT
GCTTCGGCCCCAGGTAGTAAACCCAGTTGACTGTGGGAAAATAGTTAGGG
AAATAAAGTCATAGATCAATGTATACATAATTAAGGCCTGAGAAGCAGAT
TGTTTCCCCAGCAAACAGGCCTAATCCAGAAAAGAGGAAACTCGGAGCCC
TGGAACGGGGTGAATGGTCTAATTGTGTCAAGCAACTGAGAAAAGACTAC
AAGAGGCACCCCATCCACTGAGCCAGACAGAATTCCCTCTGAGCCACTTG
TGTGAAACACTTCTTTAAACTGCAGGACTCCTCATTACATAGGCATGAGA
ACATCATGTGAAGATAAAGGCTTTGGGCTGGAGGGATCTTTCTACTGCAC
TCACCTTGACCTTGGCAGGGTTCTTCCTTGGCTTGCTCTCTTTGCTTGAA
CTGAGTCATCTCGGGTTCCTATCATCACCTAAACCACCTTTCATTCAGTA
ACTAGAGGCTGTTCCCCAGGGCATGTAATGTAATGAAAATGCAATGTAAC
TGGATGCTCCCACTTGTCTACTGAGCATCTCTGATGAGGTTCCTTGTTCC
CATCTAAGCTTAGTGTCTTTCCTTGTAAATGTGCCTCTCTCCCTCCATCC
TCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_c06.g1 MSMg01no267_c06.g1 CHROMAT_FILE:
MSMg01no267_c06.g1 PHD_FILE: MSMg01no267_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:07 2005
         (327 letters)



>mm_chr6_117569542_117570268
          Length = 727

 Score =  538 bits (278), Expect = e-157
 Identities = 312/328 (95%), Gaps = 12/328 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcattacataggcatgagaacatcatgtgaagataaaggctttgggctggagggatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcattacataggcatgagaacatcatgtgaagataaaggctttgggctggagggatct 260

                                                                       
Query: 61  ttctactgcactcaccttgaccttggcagggttcttccttggcttgctctctttgcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctactgcactcaccttgaccttggcagggttcttccttggcttgctctctttgcttga 320

                                                                       
Query: 121 actgagtcatctcgggttcctatcatcacctaaaccacctttcattcagtaactagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgagtcatctcgggttcctatcatcacctaaaccacctttcattcagtaactagaggc 380

                                                                       
Query: 181 tgttccccagggcat-gtaatgtaatgaaaatgcaatgtaactggatgctcccacttgtc 239
           |||||||||| || | ||  |    || |||    ||||||||| |||||||||||||||
Sbjct: 381 tgttccccagagcctcgt--t----tgcaaa----atgtaactg-atgctcccacttgtc 429

                                                                       
Query: 240 tactgagcatctctgatgaggttccttgttcccatctaagcttagtgtctttccttgtaa 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 430 tactgagcatctctgatgaggttccttgttcccatctaagcttagtatctttccttgtaa 489

                                       
Query: 300 atgtgcctctctccctccatcctctgac 327
           ||||||||||||||||||||||||||||
Sbjct: 490 atgtgcctctctccctccatcctctgac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)