BAC Information

Click to search

BAC

Clone NameMSMg01-267D04
Chromosome6 (Build37)
Map Location 117,569,437 - 117,569,725
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267D04.T7 (MSMg01no267_d04.b1)MSMg01-267D04.TJ (MSMg01no267_d04.g1)
ACCAG407986AG407987
length749736
length of high quality
(start - end)
194 (129 - 322)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no267_d04.b1 PHD_FILE: MSMg01no267_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:11 2005CHROMAT_FILE: MSMg01no267_d04.g1 PHD_FILE: MSMg01no267_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGATAAGTTTATAATTGCCTCTTTAAGTTCTGTGTTCTGTCTA
CTTAGGTAATTCTCATTGTTTTACTCCTCTTTATGACTGGTAGATTTTGG
GAAGGAGTTACGGCCTTGATCTATTACATTGTCTGTATATTGTTTATGAG
ATCTGGATATATAGACTTCTTTTGTTAGTTTGTTGCCTGATGTGGGCAGA
GTGCAACATATTTAGGCTGGGTTGGGCCTGAAGGTTGGATACAGCTAAGG
TGGGATGAAGTCAGGTGGGTACAGTTTACTGGGCTGACACACAGGATGTG
TAGCCTGGTCTTTGNCTTGAATTTTCNAGCAGACCCGGGGGTTTGGGAGA
GTTCTTGGAGGGGTGAACCCCGCTGACACAAAAGAATAGAACCCTGGCTC
AGGTGGGCTGAGTGGTTGGATGTGGCATGCTAAAGGCCAGTATGCTACAG
AAGGTGTTAACAGAGTTGTCCAGATTATGCTGGGGCACAGGCTGTGGCTC
CTGTGTTATATCTGGAGTGTTTGTTGCAATATTCTTGATGCTTAGACCTG
ATAGACTCTTTGCCTAGACTAGTGTAATATGACCTCATCTGCCCTGTTAT
GATAGGCCACATGATGCGTGTTCACGTATGACCCCGCCCACGCCACAAGC
AGTCTTTGTGCCCTCCGCAATTTTCCCTTTCATGGACGTACGTCTTGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTGTGCTTTGGCATCCTGTGCATT
GCTTCGGCCCCAGGTAGTAAAAACAGTTGACTGTGGGAAAATAGTTAGGG
AAATAAAGTCATAGATCAATGTATACATAATTAAGGCCTGAGAAGCAGAT
TGTTTCCCCAGCAAACAGGCCTAATCCAGAAAAGAGGAAACTCGGAGCCC
TGGAACGGGGTGAATGGTCTAATTGTGTCAAGCAACTGAGAAAAGACTAC
AAGAGGCACCCCATCCACTGAGCCAGACAGAATTCCCTCTGAGCCACTTG
TGTGAAACACTTCTTATAATTGCCCCCCCCCTCCTCTACATAGGCATGAG
AACATCATGTGAAGATAAAGGCTTTGGAATGAAAGAGATCTTTCTACTGC
ACTCACCTTGACCTTGGCAGGGTTCTTCCTTGGCTTGCTCTCTTTGCTTG
AACTGAGTCATCTCGGGTTCCTATCATCACCTAAACCACCTTTCATTCAG
TAACTAGAGGCTGTTCCCCAGGGCATGTAATGTAATGAAAATGCAATGTA
ACTGGATGCTCCCACTTGTCTACTGAGCATCTCTGATGAGGTTCCTTGTT
CCCATCTAAGCTTAGTGTCTTTCCTTGTAAATGTGCCTCTCTCCCTCCAT
CCTCTGACCTCATCAGCTCTCTCTATGGCCCTAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_d04.g1 MSMg01no267_d04.g1 CHROMAT_FILE:
MSMg01no267_d04.g1 PHD_FILE: MSMg01no267_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:11 2005
         (290 letters)



>mm_chr6_117569237_117569926
          Length = 690

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtgctttggcatcctgtgcattgcttcggccccaggtagtaaaaacagttgactgt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acttgtgctttggcatcctgtgcattgcttcagccccaggtagtaaaaacagttgactgt 260

                                                                       
Query: 61  gggaaaatagttagggaaataaagtcatagatcaatgtatacataattaaggcctgagaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaaatagttagggaaacaaagtcatagatcaatgtatacataattaaggcctgagaa 320

                                                                       
Query: 121 gcagattgtttccccagcaaacaggcctaatccagaaaagaggaaactcggagccctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct: 321 gcagattgtttccccagcaaacaggcctaatccagaaaagaggaaacacggggccctgta 380

                                                                       
Query: 181 acggggtgaatggtctaattgtgtcaagcaactgagaaaagactacaagaggcaccccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggggtgaatggtctaattgtgtcaagcaactgagaaaagactacaagaggcaccccat 440

                                                            
Query: 241 ccactgagccagacagaattccctctgagccacttgtgtgaaacacttc 289
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactgagccagccagaattccctctgagccacttgtgtgaaacacttc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)