BAC Information

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BAC

Clone NameMSMg01-267H01
Chromosome6 (Build37)
Map Location 135,673,351 - 135,813,548
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneDusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267H01.T7 (MSMg01no267_h01.b1)MSMg01-267H01.TJ (MSMg01no267_h01.g1)
ACCAG408161AG408162
length734708
length of high quality
(start - end)
315 (46 - 360)187 (115 - 301)
definitionCHROMAT_FILE: MSMg01no267_h01.b1 PHD_FILE: MSMg01no267_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:31 2005CHROMAT_FILE: MSMg01no267_h01.g1 PHD_FILE: MSMg01no267_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,813,239 - 135,813,548)(135,673,351 - 135,673,535)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGAAGTATCAAATTGGTGTGCAAGCCTTCTTGCCATTCACATA
GGTCAGGCACATAGTAAAATGGACGCAAATTCAATGAGGGTGTGAATGTG
GTAAAGCTGGACTTTAGGGTCACCTGAGGCAATCTTCAAATCACAGGCAC
AGCACTTCCATGTAACAAAACTTGAAAGGAAGCAGGGTGCAGACTTGGGC
AAAATTTCCTAAGATAATCATCAAATGACCTCATCCACTGAGCAAAGGAG
ATGGCTGGGATCTTGTGATCTTGATAGGTCTCAGTGAAAGCAACTCAAAC
CCTTCAATGTTAGTTTTCTTCACGTANACAANCCAAATTCTCCAACCTGA
AATCAATGGGTTCCCAAGGTGAAAGAACAAAAGAAAAGTTGGAGCTCGTT
CTCACGGACCATTTTCCCATTCTTACCAGCAGCACCTTCAAACATGCCTG
TGACTCTGCTGGCTACCTCTTGCTTGGTATAAGCACACCGCTTTCTTGCT
AGACCCACCAGTATTTCTTCCTCTTCTGCCTGTCTTTGCAAAGTCCAGTC
TGTTCACCCTGATTCTAAAGCCCCAAGTCTGACGTATTTAAAGGATGGAA
GAATATAAACTCCAGCGGGCCCCACCTGAGCACTGACTGCAAACCTTCAA
AGCTTATGCTCCTTCTCCTTTGTCACATATGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCA
AAACACTTCTGGATCAGTCATTAAAATTCTGACGTGTTCTCACTTGATTT
GTGTCTGTCAGAGGTAATGTGTTTAATAACCTCAGTGCCATAAAGCCTCA
GAAAGGGCAAGAAAAGAAAGTCATCAAGCCAAGGGGAGAAGCAGAACAAA
TAGCCCCTGACCCCGGGTCTGGGCCACCTGGTTACTAAGGTGGCAACTTC
CAGCACTCAGTGCAATCCTATTGGATCACAAATCCTATTGAGACTCACAT
TTTTTTTTTGTTAGTGAGCTTATCTTGTAACAAGGGCCCATATTTTTTTT
TCTCCCCCCCCCCCGCCACAAAGACCTGTCAATCCCAGNATAGATCATAC
TGTGCTAAAAAAAAACAGAGACATGTCCCGACATCAGCTCTACTCACCTC
CCATTTGATCAACATTCTTCGAAGTCTAATCTTCTGACATTTATTTTGTG
CACAACCATCACTGCAGAGACACATTAATAACCATGAAGTACCCAAAGGA
GAAGGACTTCCTAGTGTGAAGCTTGACTTGGAGAAATATACATTTCCACT
GGAAATAACCCTGTGCAAATCGCCACCCCCGCTGTGTTTGTTCTACTGAG
GCTCTGTGGGGAGAAAATAACAAACGGCTAGTTGGGGGGCCAGAATTAAT
CCTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_h01.b1 MSMg01no267_h01.b1 CHROMAT_FILE:
MSMg01no267_h01.b1 PHD_FILE: MSMg01no267_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:31 2005
         (315 letters)



>mm_chr6_135813035_135813749
          Length = 715

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgaagtatcaaattggtgtgcaagccttcttgccattcacataggtcaggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcactgaagtatcaaattggtgtgcaagccttcttgccattcacataggtcaggca 455

                                                                       
Query: 65  catagtaaaatggacgcaaattcaatgagggtgtgaatgtggtaaagctggactttaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 catagtaaaatggacgcaaattcaatgagggtgtgaatgtggtaaagctggactttaggg 395

                                                                       
Query: 125 tcacctgaggcaatcttcaaatcacaggcacagcacttccatgtaacaaaacttgaaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcacctgaggcaatcttcaaatcacaggcacagcacttccatgtaacaaaacttgaaagg 335

                                                                       
Query: 185 aagcagggtgcagacttgggcaaaatttcctaagataatcatcaaatgacctcatccact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagcagggtgcagacttgggcaaaatttcctaagataatcatcaaatgacctcatccact 275

                                                                       
Query: 245 gagcaaaggagatggctgggatcttgtgatcttgataggtctcagtgaaagcaactcaaa 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 gagcaaaggagatggctgggatcttgtgatcttgagaggtctcagtgaaagcaactcaaa 215

                     
Query: 305 cccttcaatg 314
           ||||||||||
Sbjct: 214 cccttcaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no267_h01.g1 MSMg01no267_h01.g1 CHROMAT_FILE:
MSMg01no267_h01.g1 PHD_FILE: MSMg01no267_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:31 2005
         (187 letters)



>mm_chr6_135673151_135673737
          Length = 587

 Score =  350 bits (181), Expect = e-101
 Identities = 184/185 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgtgtttaataacctcagtgccataaagcctcagaaagggcaagaaaagaaagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgtgtttaataacctcagtgccataaagcctcagaaagggcaagaaaagaaagtcat 260

                                                                       
Query: 61  caagccaaggggagaagcagaacaaatagcccctgaccccgggtctgggccacctggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagccaaggggagaagcagaacaaatagcccctgaccccgggtctgggccacctggtta 320

                                                                       
Query: 121 ctaaggtggcaacttccagcactcagtgcaatcctattggatcacaaatcctattgagac 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaggtggcaacttccagcactcagtgcaatcctattggatcacaaatcctattgagac 380

                
Query: 181 tcaca 185
           |||||
Sbjct: 381 tcaca 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)