BAC Information

Click to search

BAC

Clone NameMSMg01-268H10
Chromosome6 (Build37)
Map Location 94,373,016 - 94,373,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665831, Magi1, LOC100043262, LOC665856
Downstream geneSlc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268H10.T7 (MSMg01no268_h10.b1)MSMg01-268H10.TJ (MSMg01no268_h10.g1)
ACCAG408881AG408882
length731724
length of high quality
(start - end)
194 (124 - 317)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no268_h10.b1 PHD_FILE: MSMg01no268_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:45 2005CHROMAT_FILE: MSMg01no268_h10.g1 PHD_FILE: MSMg01no268_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCATGAAATTCTCANCCAAGTGAACAGAACTAGAAAATATCATCCTG
AGTGAGGTAACCCAATCTCACCCCAACACACATGGTATGCACTAACTGAT
AAGTGGATATTAACCCCAAAGCTCCAAATAACCAAGATACAATTCACAGA
CCACAGGAAGCTCAAGAAGAAGGAAGACCAAGGNGTGGGTGCTTCGGTCC
TTCTTAAGAGAACAAAATACTCACAGGAGCAAATATGGAAATAAAGTGTG
GAGCAAAGACTGAAGGATTTTTCATCCAGAGTCTGTCCCACCTGGATTNN
NNTCCCATATTTTTTTACCACCTCCCCACACTATTGTGGATGCCAAGGAG
CCTGATATGNCTGTCTCCTGGNAGGCCCTGCCAAAACCTTACCAATAAAG
ATAGATACTTGCAGCCCGACCTGGTGTGGGGGGGGGGGGGGGGGGGGGGG
AGGGTTANNNNNNNNNNNNNNNNNAATTNAAACCCCCNCNAAACATCACC
CACCAAACCCCNNNNNNNNNCTNTTTTATTAAGGAGAGGGGGCANCNNNN
NNNNCCNNNNNNNNAAGGGGGGCCCCCGGGAGGGGGGGGGGCGGNNNNNN
NNNNNNNNTTNTTTNTNTTTNNNNNNTNGGGGGGGGGGAGTAGCTAGAAN
NNNNNNNNNNNNNNNNNNANNNGNGAGAGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACCACTAAGCAAGCTCTACAG
AACATATTTGAAGAAACCCTTCAGACTGAGGACAAAGGCAAAGACATCCA
TGAGGCCACGAGAAAGAATAGATCATGATAGAATAATAGTTAGGATAGGA
ATAGGGGGGCTGGAGGGATGGCTCACTGGTTAAGAGCACTGGCTGCTTTT
CCAGAGATCTTGACTTCAATTCCCAGCAACCACATGGTAGCTCATAACCA
TCTGTGATGGGATCTGACGCCCTCTTCTGGTGTGTCTGATGACACTCCAG
CTAAGTATACTTTTATGCCCCACCCCCCCCCAATCAGCAAAATGATGAGA
ATTACTACATACCTTTCAATAGTAACTCTGAATATTAGAATATTAATGCT
TTCAATTCTCCAGTCAAAGACACAGATGAACAAATAAGAAAAGAAAGCAG
GAATCATATAATTACTTTGCCCATGAAAGACATTTCACTCTAAGAGACTT
TTGGTGGAAGGATAAAAACAGGTATTCCTAGAAAAAAGACTTAGGGAACA
AGCAGGTTCTAATATCTGGCAAAATGGATTTCAAATAAAAAGTAATCAGA
AGAAATAAAGAAGACCACTATATACTGATTAACATATCAAACCATCAAAC
GGGTCTGATAATTCTAAACCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_h10.g1 MSMg01no268_h10.g1 CHROMAT_FILE:
MSMg01no268_h10.g1 PHD_FILE: MSMg01no268_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:45 2005
         (285 letters)



>mm_chr6_94372816_94373500
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaccactaagcaagctctacagaacatatttgaagaaacccttcagactgaggacaaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaccacaaagcaagctctacagaacatatttgaagaaacccttcagactgaggacaaa 260

                                                                       
Query: 61  ggcaaagacatccatgaggccacgagaaagaatagatcatgatagaataatagttaggat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ggcaaagacatccatgaggccacgagaaagaatagatcatgatagaataatagttaagat 320

                                                                       
Query: 121 aggaataggggggctggagggatggctcactggttaagagcactggctgcttttccagag 180
           ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaata-ggggtctggagagatggctcactggttaagagcactggctgcttttccagag 379

                                                                       
Query: 181 atcttgacttcaattcccagcaaccacatggtagctcataaccatctgtgatgggatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcttgacttcaattcccagcaaccacatggtagctcataaccatctgtgatgggatctg 439

                                                        
Query: 241 acgccctcttctggtgtgtctgatgacactccagctaagtatact 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acgccctcttctggtgtgtctgatgacactccagctaagtatact 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)