BAC Information

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BAC

Clone NameMSMg01-269C01
Chromosome6 (Build37)
Map Location 42,655,806 - 42,656,429
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918
Downstream geneGA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269C01.T7 (MSMg01no269_c01.b1)MSMg01-269C01.TJ (MSMg01no269_c01.g1)
ACCAG409342AG409343
length739774
length of high quality
(start - end)		638 (45 - 682)231 (69 - 299)
definitionCHROMAT_FILE: MSMg01no269_c01.b1 PHD_FILE: MSMg01no269_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:31 2005CHROMAT_FILE: MSMg01no269_c01.g1 PHD_FILE: MSMg01no269_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAAGAAAACCTAAATAACCCTATAATTGTATTTTTAAATAATGAA
GTTGCTTTATTCTGGTTAACTTACAAATAAAAGCATACAGCGAGTTTAAG
AAAAGCATTCACTATAATAAAGTAATTGAACCAACAAGCCTAAAATGCCC
TGCACTTCAGCTCCAGAAGGTTTTACCATTCAAGGATTAGATAATTGCAA
TATTGTGCAGATTTTCTTTAACAGAGCCAAGGAAAAAACATTACCCATGC
TATTTTGAGATGATACCAATGGCAGATCAGAACAGTACAGAAAGCGATAA
GTATAGACCAATACTAGCTTACATAAATGTAAATAATGCTTGTCTCGGTG
TGCTATTAATAAATGCCATGACATACACACTAGAGATACACTGATATTCT
AGAGACTTCAGCTAGCTTACTGTTAGAAGTTAAATTCTATGCTTGCCACC
AAAATATATTTGAAGAGAAAGAGTTACATGAAACCTTTTGTTTTTAAAAG
GGTTGTTTTATTTTGTTTTGTGTATATGTGTTTGCGTGCATGTGTGTGAG
TGCAGAATTCCACAGAGATGAAAGGTGTGGGCTCCCCTGGAGCTGGAGTT
ACAGCCTGTAGTGAGCTATCTCCAATTCTAGATAAAGGGGAGTATATATA
CTCTCAATTTTTGAGCCTTCTCTCAGCCCCATGGATTAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGCAAGTGATCAACAGTTGTCACTGTATAG
TGAGAACGGTCTAACAATATGGGTATTAGTCTAAAGGAGGCTAGGAGACT
TCTTCTCTTCTCTTCTTTCTCTCCTCTTCTCTTCTCTTCATTTCTTTTTT
TCTTCTCAGTAACAACTTGCGTTATTGTTAACTCTGTAAAGCAATAAACA
ATAATTCATCAAAGTGTTGCTTGATTATTCATGAAACAAGTAAAAGTTTT
CATCTTTTANTAACTGGGAATAGGATGAGTACAAACACAATCCANGAGGA
GGAGAACTTATGTCATGAGCGGGGTATTTTTCTCAGCTGCTCATATTGAG
GTCANGGTGAGATCCCCCTTAATTTAAAGATGTCTGATATGGAAAATCCT
TCCCTAAAATCTTAAAAAACCTCCCCCCTCAAATTCCCANNNAACCCCTG
TGTTGGGGGGGNNNAGAAAANGAAAACGAAAATGTGGTGCGTGGGGGGNN
NNAATTTNAATTTTTGNNNNNAAAAAGGGGTAAAAAAAAAANNNATGTTN
GNCGTTGTGGAAAGGGGGGANNNNNNNNNNNTTGTATTATTCNNNCCATT
ANNNNNNNNNNNNNNNNNNNNNNNNNGNNGGGGGGGGGCGGNNAAAAAAA
AAGATTAACCCCTTCGCTCCTTTTAAAAACCCCCTTACCTATAATCTGGG
TGTATTTTGGGGAGAAAAAATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_c01.b1 MSMg01no269_c01.b1 CHROMAT_FILE:
MSMg01no269_c01.b1 PHD_FILE: MSMg01no269_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:31 2005
         (638 letters)



>mm_chr6_42655602_42656640
          Length = 1039

 Score = 1112 bits (575), Expect = 0.0
 Identities = 615/635 (96%), Gaps = 12/635 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataagaaaacctaaataaccctataattgtatttttaaataatgaagttgcttt 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatccataagaaaacctaaataaccctataattgtatttttaaataatgaagttgcttt 264

                                                                       
Query: 65  attctggttaacttacaaataaaagcatacagcgagtttaagaaaagcattcactataat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attctggttaacttacaaataaaagcatacagcgagtttaagaaaagcattcactataat 324

                                                                       
Query: 125 aaagtaattgaaccaacaagcctaaaatgccctgcacttcagctccagaaggttttacca 184
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 325 aaagtaattgaaccaacaagcctaaaaccccctgcacttcagctccagaaggttttacca 384

                                                                       
Query: 185 ttcaaggattagataattgcaatattgtgcagattttctttaacagagccaaggaaaaaa 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaaggattagataattgcaacattgtgcagattttctttaacagagccaaggaaaaaa 444

                                                                       
Query: 245 -cattacccatgctattttgagatgataccaatggcagatcagaacagtacagaaagcga 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acattacccatgctattttgagatgataccaatggcagatcagaacagtacagaaagcga 504

                                                                       
Query: 304 taagtatagaccaatactagcttacataaatgtaaataatgcttgtctcggtgtgctatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagtatagaccaatactagcttacataaatgtaaataatgcttgtctcggtgtgctatt 564

                                                                       
Query: 364 aataaatgccatgacatacacactagagatacactgatattctagagacttcagctagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aataaatgccatgacatacacactagagatacactgatattctagagacttcagctagct 624

                                                                       
Query: 424 tactgttagaagttaaattctatgcttgccaccaaaatatatttgaagagaaagagttac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tactgttagaagttaaattctatgcttgccaccaaaatatatttgaagataaagagttac 684

                                                                       
Query: 484 atgaaaccttttgtttttaaaagggttgttttattttgttttgtgtatatgtgtttgcgt 543
           |||||||||||||||||||||||||||||||||||||||           ||||||| ||
Sbjct: 685 atgaaaccttttgtttttaaaagggttgttttattttgt-----------gtgtttgtgt 733

                                                                       
Query: 544 gcatgtgtgtgagtgcagaattccacagagatgaaaggtgtgggctcccctggagctgga 603
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 734 gcatgtgtgtgagtgcagaattccacagaggtgcaaggtgtgggctcccctggagctgga 793

                                              
Query: 604 gttacagcctgtagtgagctatctccaattctaga 638
           |||||||||||||||||||||||||||||||||||
Sbjct: 794 gttacagcctgtagtgagctatctccaattctaga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space:   646212
Effective search space used:   646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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