Query= MSMg01no272_b03.b1 MSMg01no272_b03.b1 CHROMAT_FILE:
MSMg01no272_b03.b1 PHD_FILE: MSMg01no272_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:06 2005
(327 letters)
>mm_chr6_85915207_85915923
Length = 717
Score = 350 bits (181), Expect = e-101
Identities = 280/329 (85%), Gaps = 32/329 (9%)
Strand = Plus / Minus
Query: 5 gaattcttcatt--cactcttgtaacaggagacagagactgggttgctctgagagag--- 59
|||||||||||| | ||| || | |||||||||||||||||| |||||||||||
Sbjct: 465 gaattcttcatttgctctcatg--ataggagacagagactgggtcactctgagagagaga 408
Query: 60 --aaagggggaaaaaaggaggaaagaggtaagatttaatcctgctccagccatgccagtg 117
||| |||||| |||||||| |||||||| |||| ||||| | ||||| ||
Sbjct: 407 gaaaa-----aaaaaaagaggaaag-----agatttaaccctgttccagtcgtgccaatg 358
Query: 118 gtcagcacagaatgtgtgtataccacagactgctcctcgggatatcagagaagataagac 177
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 gtcagcacag-atgtgtgtataccacagactgctcctcaggatatcagagaagataagac 299
Query: 178 accaatgcagtgacaactcagatgaatccagtgagcaagtccagctggagacagtaacac 237
||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 298 accaatgcaatgacaacgcagatgaatccagtgagcaagtccagctgg----agtaacac 243
Query: 238 aaaggaagaagagtgatggaattggcaccagggacatctgtgacctggggaccataatgc 297
|||||||| |||| |||||||| |||||||||||||||||| |||||||||||
Sbjct: 242 aaaggaagcagag--------ttggcaccggggacatctgtgacctggagaccataatgc 191
Query: 298 aaagtggctcttggggagagtttggctta 326
|||||||||||||||||||||||||||||
Sbjct: 190 aaagtggctcttggggagagtttggctta 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 717
Length adjustment: 9
Effective length of query: 318
Effective length of database: 708
Effective search space: 225144
Effective search space used: 225144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_b03.g1 MSMg01no272_b03.g1 CHROMAT_FILE:
MSMg01no272_b03.g1 PHD_FILE: MSMg01no272_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:07 2005
(294 letters)
>mm_chr6_83762131_83762823
Length = 693
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 1 ttgtaaaaaacacattagttatatttgtgaacgatttatattcatattctgaccatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 491 ttgtaaaaaacacattagttatatttgtgaacgatttatattcatattccgataatttta 432
Query: 61 atattaaagagaaaagggactcagttctgctaagcaggaggcaaataccaattctctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atattaaagagaaaagggactcagttctgctaagcaggaggcaaataccaattctctgca 372
Query: 121 acttggaggtattgtcactggcgagacatgacataggatgtagaagacactgctcagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acttggaggtattgtcactggcgagacatgacataggatgtagaagacactgctcagttg 312
Query: 181 tgtgttaggggtcttttacattcctgttttctaactggaggaatttttttttcttaagct 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 311 tgtgttaggggtcttttacattcctgttttctaactggaggaa-ttttttttcttaagct 253
Query: 241 cctatcatttccccatgcgtgtctaataactgaactcagagcaggcataatg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cctatcatttccccatgcgtgtctaataactgaactcagagcaggcataatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space: 194940
Effective search space used: 194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
