BAC Information

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BAC

Clone NameMSMg01-272C07
Chromosome6 (Build37)
Map Location 109,697,198 - 109,697,510
singlet/doubletsinglet
Overlap genenone
Upstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272C07.T7 (MSMg01no272_c07.b1)MSMg01-272C07.TJ (MSMg01no272_c07.g1)
ACCAG411508AG411509
length738733
length of high quality
(start - end)
320 (45 - 364)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no272_c07.b1 PHD_FILE: MSMg01no272_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:12 2005CHROMAT_FILE: MSMg01no272_c07.g1 PHD_FILE: MSMg01no272_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAGTGTTCCCGGGCATTTGTTTTTATGATCTTCTTCCAAGAGCA
CAGTATATCGTACACTAGAAAAGACGGGGGAACAGTAACACATTTGAAGT
GTTGGCACTGAACACAAAGTCATTTCTTACAGAATAGATTGAGGGATCAG
GGCAGCATTCCACTCTGAAGGTCAGACAGTGGGTTTATTTGTCATTAATA
ATTAGATCTGAGGGTACTGTCGGTTCAAATAGAGAATGGGTATCATGGGC
ATTTTATTCTTGGAGGACAACACCTTTTAAATGTTAAAGTATTCATATTT
CGAAGCAAATATAATATGTTTGCACCCCCCCCCTTATTTATATGGTATTT
TCTTTTAAGGAGACATGCCACCTCAATTAACCCTATTATGTTCTGGATTA
AGAAAATCTGATGATCAAATCAACTAAGAATTTGTATATGATTCTATATT
GTTGAGAATGAAGCTTTTCACTTGGAAAAAGATTGTTATTATAGTGTGGA
GTGTTCCTCCCCAGGTATATGAAATACTCCCATAACAACTTGGTGATACC
TTAATTGATAAAGCGCTTGTCTTGCTATTTTGAAGACCCCAGTTTATTCT
TACAACCCATATAAGGATATATGGAGATACTCTAAGGGAGATGATAGGCC
CTTTGTGTCTCACCGATTCTGTTCACGTTCTCTTTTTT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTT
TAATGGGGTTATTAGATTTTTTTGGCATCCACCTTCTTGAGTTCTTTGTA
TATATTGGATATTAGTCCTCTATCTGATTTAGGATTGGTAAAGATCATTT
CCCAATCTGTTGTTGGCCTTTTTGTCTTATTTCCAATGTCCTTTGCCTTA
CAGAACCTTTGCAATTTTATGAGGTCCCATTTTTCAATTCTTGATCTTAC
AGCATAAGCCATTGCTGTTCTGATCTTAAATTGTTCCCCTGTGCACATAT
CTTTGAGGCTTTTCTTTTTCTTCCCCCCCCCCCAGTTTCAGTGTCTCTGG
TTTTATGTGGAGATCCTTGACCCACTTAGACTTGAGCTTTGTACCAAGAG
ATAAGAATGGATCAATTCACATTCTTCTACATGAAAACCACCAGTTGAGG
CAGCAACATTTGTTGAAAATGCTGTCTTTTCTCCACTGGATGGCTTTAGC
TCCATTGTCAAAGATCAAGTGGTCATAGGTGTGTGGGTTCATTTCCTGGC
TCTTCAATTCTATTCCAATGATCCATCTGTTTGTTGCTGTACCATTAACA
TGAATTTTTCATCTATTTGCCCTGCAGTATAGTTTGCAATTTTGCTCGGT
GATCCCCCACCACTTTTTTCCCTTTTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_c07.b1 MSMg01no272_c07.b1 CHROMAT_FILE:
MSMg01no272_c07.b1 PHD_FILE: MSMg01no272_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:12 2005
         (320 letters)



>mm_chr6_109696994_109697713
          Length = 720

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagtgttcccgggcatttgtttttatgatcttcttccaagagcacagtatat 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagtgtgcctgggcatttgtttttatgatcttcttccaagagcacagtatat 264

                                                                       
Query: 65  cgtacactagaaaagacgggggaacagtaacacatttgaagtgttggcactgaacacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtacactagaaaagacgggggaacagtaacacatttgaagtgttggcactgaacacaaa 324

                                                                       
Query: 125 gtcatttcttacagaatagattgagggatcagggcagcattccactctgaaggtcagaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcatttcttacagaatagattgagggatcagggcagcattccactctgaaggtcagaca 384

                                                                       
Query: 185 gtgggtttatttgtcattaataattagatctgagggtactgtcggttcaaatagagaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgggtttatttgtcattaataattagatctgagggtactgtcggttcaaatagagaatg 444

                                                                       
Query: 245 ggtatcatgggcattttattcttggaggacaacaccttttaaatgttaaagtattcatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtatcatgggcattttattcttggaggacaacaccttttaaatgttaaagtattcatat 504

                        
Query: 305 ttcgaagcaaata 317
           |||||||||||||
Sbjct: 505 ttcgaagcaaata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)