TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTTACACTCGAACATGAAATGTATATTGGGGAAATACCTATTA
CCAGCTATGAAATATGTATGAGACTCTCAAGCCAACTTGTAAAATAGAAT
TTCTCCTAGAAGCAGAATGGAATGGTTACCCTGCTTGGGAATTCACTATT
AAAGAAGAATTGTATTGATATGTACTAAGTGTTGTTTGACTAAATGAATA
ATGCATTCCTTCATGCACTGGAATACCTAGTTTTGTGGGCTCATTTCTAT
ATCATATTACTATTAAGGCACCTACTTATGTGCTGCCTTTTGCATCTGGG
GCTTGTTTTGTTTGATAAAATCCATAATTATTTAGACATTTATGATATAA
TCTGTAATCAACGTGCTCTGAGGTCTTAATGCTATAGTTAAGCATGCCAA
GAAAGGAAAATGCTGAGAACTTTAATTTTTAGGTTAGGTCATTGTTATAG
ATAATGACAGAAAGTTCAAGTTAATTAAATTTTTTCTACTGTATTTTTCC
AGAATAAAAAACAAAATAGTGTTAATTATAGTTATCTGAGGAATTAATGT
ATTTATTTGCTTTTTATTTTATTTTGGTGTGTATGCTCATTTATATGTGA
GACTTTTATCTTGTATGTGCTACCATATGCACATAGACATTAGAAGACCA
CTATAGTTTTCAGTCTTTGACACGTTGCTTTTGTTAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCTGAAATTCTACAGGGCTAACAACAGAGTTAATT
TAACTAAACCTTTGGGGCTCTCAGACACTGAACAACCAACCAAAGAGCAT
ACACTGGCTGAATGTAGGGCTACCTGCACATATGTGGCAGATGTGTAGCT
TGGTCTTCAAGTCAGTTCCAAATAATTGGAACAAATATATCCAAAAGCTG
TTGCCTGTCTTTTGGATATATTTGTTTTTATATCTGGGCTGCCTTTTCTG
GCCTCAGTGGCAGAGGATGTGCTTATTCTCACAGAGACTTGATGTGCCAG
GGTTGGAGGATACCCTTTTTTGCACCCCCCCCTCTCCAGAGTAGGAAAGG
TGAGGATGGGGAAGGATTCTGGGAGGGGAAAGAAGAAAAATTTGCCTTGT
GCGGCCTTTTCCCCCTTTCCTTTTTTTCCCTTTCCTCTTTTCCTCTTCCC
TCTCCATTTCGCCTTCTTTCCTTTTTCCCCTTTTTCTCCTTTTTTCACTT
TCTCCTTTCCCTCCCCCCGCCCTTCTCCCCCTTTCCCCTCTTTTCTCACC
TATTTCCTCTCATTTTCCTCAACAATTCAATACTTCAAAACCACCTTTCT
TTCTTCTTTCTCATTACCTCTCCCTCGCCCTTCTTTTTTTTCCCTCCCTT
TTTTCTCCTCCCCCGTTTTCCCTCCTCCCCTCCCCCTCTTCCTCCTATTT
TCCCCTTCTGTTATCCTCCN

Query= MSMg01no272_k01.b1 MSMg01no272_k01.b1 CHROMAT_FILE:
MSMg01no272_k01.b1 PHD_FILE: MSMg01no272_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:49 2005
         (693 letters)



>mm_chr6_104011840_104012931
          Length = 1092

 Score = 1270 bits (657), Expect = 0.0
 Identities = 681/689 (98%), Gaps = 1/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcttacactcgaacatgaaatgtatattggggaaatacctattaccagctat 64
           ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccttcttacacaggaacatgaaatgtatattggg-aaatacctattaccagctat 263

                                                                       
Query: 65  gaaatatgtatgagactctcaagccaacttgtaaaatagaatttctcctagaagcagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaatatgtatgagactctcaagccaacttgtaaaatagaatttctcctagaagcagaat 323

                                                                       
Query: 125 ggaatggttaccctgcttgggaattcactattaaagaagaattgtattgatatgtactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaatggttaccctgcttgggaattcactattaaagaagaattgtattgatatgtactaa 383

                                                                       
Query: 185 gtgttgtttgactaaatgaataatgcattccttcatgcactggaatacctagttttgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgttgtttgactaaatgaataatgcattccttcatgcactggaatacctagttttgtgg 443

                                                                       
Query: 245 gctcatttctatatcatattactattaaggcacctacttatgtgctgccttttgcatctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctcatttctatatcatattactattaaggcacctacttatgtgctgccttttgcatctg 503

                                                                       
Query: 305 gggcttgttttgtttgataaaatccataattatttagacatttatgatataatctgtaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggcttgttttgtttgataaaatccataattatttagacatttatgatataatctgtaat 563

                                                                       
Query: 365 caacgtgctctgaggtcttaatgctatagttaagcatgccaagaaaggaaaatgctgaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caacgtgctctgaggtcttaatgctatagttaagcatgccaagaaaggaaaatgctgaga 623

                                                                       
Query: 425 actttaatttttaggttaggtcattgttatagataatgacagaaagttcaagttaattaa 484
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actttgatttttaggttaggtcattgttatagataatgacagaaagttcaagttaattaa 683

                                                                       
Query: 485 attttttctactgtatttttccagaataaaaaacaaaatagtgttaattatagttatctg 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 684 attttttctactgtatttttccagaataaaaaacaaaatagtgataattatagttatctg 743

                                                                       
Query: 545 aggaattaatgtatttatttgctttttattttattttggtgtgtatgctcatttatatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 aggaattaatgtatttatttgctttttattttattttggtgtgtatggtcatttatatgt 803

                                                                       
Query: 605 gagacttttatcttgtatgtgctaccatatgcacatagacattagaagaccactatagtt 664
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 804 gagacttttatcttgtatgtgctacaatatgcacatagacattagaagacaactatagtt 863

                                        
Query: 665 ttcagtctttgacacgttgcttttgttag 693
           |||||||||||||||||||||||||||||
Sbjct: 864 ttcagtctttgacacgttgcttttgttag 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space:   739006
Effective search space used:   739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)