BAC Information

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BAC

Clone NameMSMg01-272N05
Chromosome6 (Build37)
Map Location 5,746,790 - 5,747,080
singlet/doubletsinglet
Overlap geneDync1i1
Upstream geneLOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
Downstream geneSlc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272N05.T7 (MSMg01no272_n05.b1)MSMg01-272N05.TJ (MSMg01no272_n05.g1)
ACCAG412000AG412001
length755760
length of high quality
(start - end)
237 (119 - 355)293 (67 - 359)
definitionCHROMAT_FILE: MSMg01no272_n05.b1 PHD_FILE: MSMg01no272_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:04 2005CHROMAT_FILE: MSMg01no272_n05.g1 PHD_FILE: MSMg01no272_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTC
TTTATGCCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGTCTAC
CTTTTCAGGTGTGTTACGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGG
GTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGT
TTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTT
TGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGCG
TGGGAGACAAGCTCTCTTTTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGT
AGGCTTTTTTTCTTCTCTNACGGACCCCGTACAGTTATCTGGTGTTTGGA
CCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGC
TGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTC
GCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTG
GAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCC
CAGAAACGGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCC
CTCCGCGGAGTCCCGGAGCCATGAAGGCTCCTGCCGGCGCCTGTGCCACA
AACCTCTCAGGCCAGGTTTATCCCGTGCTCTCACCAGTAAGCGTCCGGCT
GTTTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATGCTTAAGGACAGAAAGGAGGAGTAAGAGAGA
ATGAAGAACAAGCACTGCCAAAATAAAGGCTGAAATGGAAATGGGCTCTG
CTCTGGATGTTTGTCATTTTTATTATATCACCCTGCACAGTTTCACCTTG
GCAATTCTTTTTTTTTTTTAAAGTGATTTTAATTAAAAAAAATCCAACAA
CTAAACTAGATTTACATAGGACTTCATAGAACTATAATAAAGTAAATAAT
TCAAAATCACCTAAAAGCTCTTTTAAGACTCATCTATCTGGATGAACTGT
GGCTGTGTTATAGTTCCNNGGACGAANCCAAATAGGTGAAGCCCTGGGGC
TGGTTTTCCAGATGAGCAGCACAAACAACGTTTTGAGAGAAGACTGAAAA
GCCAGTTACCACCTAAAATCCACAGCGCGAACACCTGGGGGTTAGAATCC
TTCATCTGTGATTTGGAAGCCTGACCAATGTCTCCTCGTCCCCAAGAACT
TCAATGGCCACTAAAGGTTGTGTTTCCCTGGCCTGGCAATATCAGAGAAT
GGAGAGAGATGGACTTCAGTGTATGAACAGAATCCTTTTGACTCCCCCAG
TCAGCAGTCCAGTTCCAGAGCACATGACTTAGTGCCCCTGAAAGAAGGAG
ACAGTTCTGAATCAGCCTTAAGAAGGTCTAGGAAACAGGGCAGGATGAAC
AAGAGTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_n05.g1 MSMg01no272_n05.g1 CHROMAT_FILE:
MSMg01no272_n05.g1 PHD_FILE: MSMg01no272_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:04 2005
         (293 letters)



>mm_chr6_5746413_5747106
          Length = 694

 Score =  464 bits (240), Expect = e-135
 Identities = 279/292 (95%), Gaps = 2/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgcttaaggacagaaaggaggagtaagagagaatgaagaacaagcactgccaaaataaag 62
           ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||| ||
Sbjct: 668 tgcttgaggacagaaaggaggagtaagagagaatgaagaacaagcactgtgaaaatatag 609

                                                                       
Query: 63  gctgaaatggaaatgggctctgctctggatgtttgtcatttttattatatcaccctgcac 122
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 608 gctgaaatggaaatgggctctgctctggatgtttgtcatttttattacatcaccctgcac 549

                                                                       
Query: 123 agtttcaccttggcaattcttttttttttttaaagtgattttaattaaaaaaaatccaac 182
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agtttcaccttggcaattc-tttttttttttaaagtgattttaattaaaaaaaatccaac 490

                                                                       
Query: 183 aactaaactagatttacataggacttcatagaactataataaagtaaataattcaaaatc 242
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aactaagctagatttacataggacttcatagaactataataaagtaaataattcaaaatc 430

                                                               
Query: 243 acctaaaa-gctcttttaagactcatctatctggatgaactgtggctgtgtt 293
           |||||||| || |  | ||||||||||||||||||||||||| |||||||||
Sbjct: 429 acctaaaaggcacaataaagactcatctatctggatgaactgcggctgtgtt 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)