BAC Information

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BAC

Clone NameMSMg01-272P07
Chromosome6 (Build37)
Map Location 135,199,501 - 135,199,615
singlet/doubletsinglet
Overlap geneGsg1
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik
Downstream genePbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272P07.T7 (MSMg01no272_p07.b1)MSMg01-272P07.TJ (MSMg01no272_p07.g1)
ACCAG412095AG412096
length745739
length of high quality
(start - end)
---115 (541 - 655)
definitionCHROMAT_FILE: MSMg01no272_p07.b1 PHD_FILE: MSMg01no272_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:14 2005CHROMAT_FILE: MSMg01no272_p07.g1 PHD_FILE: MSMg01no272_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGTTCCCCATGGAAATATGATTGGTATGAAGATAGACAGTGT
TTCTGGGAAAGCATCCATTACAACCATTCGCGTGATTTTGCTGGTAATTT
ATTTTATGGAATGGTGTCTGCCGAGGACTAATTTAGCTAAGTCTATAGTG
GCTGACGAGATGTCTCAGTGCTTAATAGAGAGTGCTTGATGCGTAAGTAT
GATGATGACAGTGAGGATCATTGAGTTAACACCCGTGAAAAACCGAGGCC
AGGGAACCATATGGCCGTGCATGTCTTTTCAGTAATGCTGACTCCGGCCA
GTTCCCTAGACAGCACTTTTTTTTTATTCCCCCGCCCTCCCTGTACTTAG
ATACTCTGTCCCATGGGGATTACACCCACACAGGCAAGACATGTAGTGAC
CTTCTCTGCTTTGAGCACGTATGCCTGATCACACATTTACATGACGACCA
TATTATTTTATACGCCTTCTCTATTATGATGAGATTCTGCTTAACCGAGC
TGCAGCTCATACTCTATCTCTTTATGGAAGACCCATTCTTCTCTGATAGG
TTCTGGAAGCACAGTTCACCTCGTTAATCACCAGAGCTTTGCAAATCTTA
TGCATTTTATCTCTTCCCCTGCCTACTCCTATTATCACTATGATCAGATA
CATTCTGTGCTCTCAGTCTATTAGAGTAAACTGTTTCCTTGTCTC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAAGGCTGACACATGGAAATCTGTA
GATTGGGATCTGGACGAAAGCCAACTGAAGGAAAGAGCAGGTCTGCAGAA
CGAAGCCTTCTCTACCCGCATTGGACTGGATTGGAGGAAAGGAAAGGGCA
GGAAAGAAAATATGGAGGGTATAGCGCCACCCAGCGGCAAGAGGGAACCA
TGCATCCTGAAAGCAAGCCTATTCCAGAACAAAATGGGACCGCAAAATTT
TTTGACCCCTTCTCCCACAGATAGTGAGATGGGTCACAATGAGTAAAGGG
GTGCTTGGGTGTTTTTATTCCCCACACCCCCCGGGCCTGAGAGATGGCTG
AGCTGGTGAATGGACTCGCCACGAAGACTGACAACCTGAGTTTGATTTCT
GGAACTCACACCGTAGAAGAAGAGAACCGAACTTTCGGGATAGCATTTGA
GATGTATATAAAGAAAATATCTAATACAAAAAATAGTAGAGAACTCCTGA
ACAGCAGTCTACAACCACTTTCTTTTCCAACCATTTGGCCTCAAGGGAGC
CATTGAAGGCACAAGTGACCAGTGACCAGCTGTAATTATTTCTCCTTTCT
CTGAATGAAGTTCTGACTTCTTTGTTGGATTGTAAAATCGGTTTCTTCCA
CAGCTTCATAAGTGATCATGACTTCATTGTCATCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_p07.g1 MSMg01no272_p07.g1 CHROMAT_FILE:
MSMg01no272_p07.g1 PHD_FILE: MSMg01no272_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:14 2005
         (115 letters)



>mm_chr6_135199301_135199815
          Length = 515

 Score =  223 bits (115), Expect = 4e-63
 Identities = 115/115 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactcctgaacagcagtctacaaccactttcttttccaaccatttggcctcaagggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaactcctgaacagcagtctacaaccactttcttttccaaccatttggcctcaagggagc 256

                                                                  
Query: 61  cattgaaggcacaagtgaccagtgaccagctgtaattatttctcctttctctgaa 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cattgaaggcacaagtgaccagtgaccagctgtaattatttctcctttctctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)