Query= MSMg01no273_b05.b1 MSMg01no273_b05.b1 CHROMAT_FILE:
MSMg01no273_b05.b1 PHD_FILE: MSMg01no273_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:23 2005
(477 letters)
>mm_chr6_77519247_77520124
Length = 878
Score = 909 bits (470), Expect = 0.0
Identities = 476/478 (99%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 1 gctttgccagtcttagaagggcaaagaccaattggagtcactttatatttctaactttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctttgccagtcttagaagggcaaagaccaattggagtcactttatatttctaactttcc 619
Query: 61 tcaaaaagaagtttattggtttgtttaattatttgtatctttaaaataatagtactccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcaaaaagaagtttattggtttgtttaattatttgtatctttaaaataatagtactccac 559
Query: 121 ataagaacacattaaaattaactgcatattttctcatcttccaaacacagctg-tttttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 558 ataagaacacattaaaattaactgcatattttctcatcttccaaacacagctgttttttt 499
Query: 180 aacatttcctggaaatgtttctattatttttctatataaacgttttattttattattcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aacatttcctggaaatgtttctattatttttctatataaacgttttattttattattcat 439
Query: 240 ttttgtctagaagtagataacttagctatccatttgaaagcagtaaagcactagattgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttgtctagaagtagataacttagctatccatttgaaagcagtaaagcactagattgtt 379
Query: 300 tttggattgcttattaaatgacattcatttacttctttgagtaacaattttatactgcat 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttggattgcttattaaattacattcatttacttctttgagtaacaattttatactgcat 319
Query: 360 agggtactgaatcttgcaggtgtattgccaagtcatacatcagcttatcttctttggtct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agggtactgaatcttgcaggtgtattgccaagtcatacatcagcttatcttctttggtct 259
Query: 420 gagagaaattagtatatgtagccaacatatatttgagtactcactatttccctataat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gagagaaattagtatatgtagccaacatatatttgagtactcactatttccctataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space: 405356
Effective search space used: 405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_b05.g1 MSMg01no273_b05.g1 CHROMAT_FILE:
MSMg01no273_b05.g1 PHD_FILE: MSMg01no273_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:23 2005
(292 letters)
>mm_chr6_77367220_77367911
Length = 692
Score = 511 bits (264), Expect = e-149
Identities = 285/292 (97%)
Strand = Plus / Plus
Query: 1 agtgagtagaccaatgggactatccacataatatttatattaaaaaagaggacctaatta 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 201 agtgagtagaccaatgggactatccacataatgtttatattaaaaaagaggaaataatta 260
Query: 61 aattaagccagacagagggattttatatagctctcttatgagagtagagaagagtctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaagccagacagagggattttatatagctctcttatgagagtagagaagagtctaaa 320
Query: 121 tggtatatacattgattttcagttcttttcatcccttgcttcatgtaaagcaacccctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtatatacattgattttcagttcttttcatcccttgcttcatgtaaagcaacccctta 380
Query: 181 tgcattctcagatctaacataaaagtatgttgggaatatttaactgctatagacacttct 240
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 381 tgcattctcagatctaacataaaagtatgttggcaatatttaacttctatagacactcct 440
Query: 241 agataagagactaatcggtttgtgagcaacacagaagctgacatctctagag 292
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agataagagactaatcggtttgtgagcaacacaaaagctgacatctctagag 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
