BAC Information

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BAC

Clone NameMSMg01-273P11
Chromosome6 (Build37)
Map Location 110,063,613 - 110,063,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273P11.T7 (MSMg01no273_p11.b1)MSMg01-273P11.TJ (MSMg01no273_p11.g1)
ACCAG412828AG412829
length729725
length of high quality
(start - end)
450 (44 - 493)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no273_p11.b1 PHD_FILE: MSMg01no273_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:26 2005CHROMAT_FILE: MSMg01no273_p11.g1 PHD_FILE: MSMg01no273_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATAAAGTCACTAATTCATCTACAAAGCATTAACTCAAAAATTCATC
TTCATGTTGATCTGCATGAAACTTACCCAATAGAATGGGACAATGTCTAG
GTATCATCTGTTTATGTAATAGTGCCAGGAAAGGCATATCAGGAGCAAGA
AGCAATCTTGGGATGAAGTCTCTGGGGTTGTGCCTCTCCAGAGTGCATCC
ATCTTAGTCATGCAAAATGGTGAGCCATCTCCAGAAAACTCACTTGCTTG
CCATAGACTTTCCTAGATGGCTTCTATCAGTGGACAGTCTTTCACTTTGT
TGCCTGCCATTGTATTCCCCTGCCCCTAACTTGACTACCTGGTTGGGACT
CATTGGTGCAGGATGCATTTAGTTCTGAGAATGGATGTCCCAGGGTGGGG
TGGTACTCAGGGGGGGGGGGGCTTCCCCTTCTCTGAGGAGAGACTGAATG
GGTAATGAGGGGCATTATAAAGATGGGACTGGGAGGAGAGGAGGTAGGTT
CATTTTTCCCTTTTTCCATTACTATTTATATCTTCCCCTTACTTTTTGTC
CTTTTTTCTGACCGCTTCTCCCTATTTACACATCATCCATATACTCCTAT
AACTATTTATATTCAACCCACTACGCTTTTTTACCCTACCTCTGTCCTTC
TTCCTTATCTCCCTTCCCACACCTTCCCN
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGATGACCATAGCTATGTTTAC
AAGGGGGCAAATGAAGAGGCTCACCTTCAGGAGGCTGTCCCTCAATTTTA
GCAGCAGGAGTTTTGTTTTCTCTATTGATCCCAGAATAGCAATAGGAGTT
GGACCATTCTGCCAAAGTAACATGTATTTGTTATGCATACCAATATGATT
ATAAATATGCTTTACTGAACACATATGGTGTTAGGTGCTATTATAAACAC
CATATGTTTATTATACTATTCAGTTTGCTCTCCTTTAAAGGAAGGGTTAT
TAACACCTCATTTGTCTTACAACACACCCAAGTCATAAAAAGGTCATGTA
ATTTATCAAAGTCCTGCAGCTAATTAATTATTTAAATCAAAAGACAAACA
ATTTAAACATTAAAATAGGAGTTCCGGAGTCTGGTTCTTTTTTGGTTTTG
TTTATAATTTTGTTTTGTTATTGTTGTTGTTTAATTAAGGTTGGCTGTTG
TCAATGATGAACATCTTTGATGAAAGAAGTTTTAATGAAGAAAGTTGTAA
AAGATCTTTCTCACTTCTTCTGTTGCTGAATCTCATCATTCTAAGCAGAG
ACTGAAAAGCTTAACAAAACAAATAACAAACTACAGGGCACTTGACTATT
TTGACTTAAATATCTTGGGGCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_p11.g1 MSMg01no273_p11.g1 CHROMAT_FILE:
MSMg01no273_p11.g1 PHD_FILE: MSMg01no273_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:26 2005
         (288 letters)



>mm_chr6_110063413_110064100
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgatgaccatagctatgtttacaagggggcaaatgaagaggctcaccttcaggaggc 60
           ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct: 488 tattgatgaccatagctatgtttacaagggggcgaatgaagaggcttagcttcaggaggc 429

                                                                       
Query: 61  tgtccctcaattttagcagcaggagttttgttttctctattgatcccagaatagcaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtccctcaattttagcagcaggagttttgttttctctattgatcccagaatagcaatag 369

                                                                       
Query: 121 gagttggaccattctgccaaagtaacatgtatttgttatgcataccaatatgattataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gagttggaccattctgccaaagtaacatgtatttgttatgcataccaatatgattataaa 309

                                                                       
Query: 181 tatgctttactgaacacatatggtgttaggtgctattataaacaccatatgtttattata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tatgctttactgaacacatatggtgttaggtgctattataaacaccatatgtttattata 249

                                                           
Query: 241 ctattcagtttgctctcctttaaaggaagggttattaacacctcattt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctattcagtttgctctcctttaaaggaagggttattaacacctcattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)