BAC Information

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BAC

Clone NameMSMg01-275G04
Chromosome6 (Build37)
Map Location 148,890,436 - 148,890,790
singlet/doubletsinglet
Overlap geneTera
Upstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395
Downstream geneLOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275G04.T7 (MSMg01no275_g04.b1)MSMg01-275G04.TJ (MSMg01no275_g04.g1)
ACCAG413853AG413854
length735736
length of high quality
(start - end)
337 (379 - 715)355 (379 - 733)
definitionCHROMAT_FILE: MSMg01no275_g04.b1 PHD_FILE: MSMg01no275_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:07 2005CHROMAT_FILE: MSMg01no275_g04.g1 PHD_FILE: MSMg01no275_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTGCTTTTGCATCTGGAATGCAGGATAGAGTATAGGAGGAGGCTGA
AAAGGTAGGTAGGAACCAACGTTTTATGGGGAAGAGTAGCTTTGGCTTCT
GATGGCTAAGTAGAGTTGATTTGTATATATACAGCTGCTGTTCTTGGCAA
GTAATGTTTATTTCAAACTACTTTGTAGTTGTTGGACTTTATTTATTTAT
TTATTTAGGTTTTTCGAGACAGGGTTTCTCTGTGTATCCCTAACTGTCCT
GGAACTCACGCAGGTGGGTCTCAAACTCAGAGATTCACCTGCCTCTGCCT
CCTTGACTTGTTATTAAAGGCCTGCAAGCTTTAATTAAGCTAGCTTGCTT
GCTCTCTCTCTCTCTCTCTTTCTCTCTCTTCCTTTCTCTCTTTCTTTCTT
GATTCTTCTCTCATACCTTTCCCAGCCCCACCCCCCCTCCTCCTCCATTT
CACCTCAAAATAAAAACAGGCCTCCCAGGGAAATCAACTGAACATGGCAT
AACATGTGTGCCAGTAAGACTAGGCACAAATCCTGGTAATCAAAGCTGAA
GAGGCAACCCAGTAGGAGAGAAAGGGTCCCAAGAGCAGGCAAAGTAGACA
CCGCCCTCTCCCACAGGGAGAATGCCTAGCATTTTTTTTTTTTTTTTTTT
TTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGTTGCAGAAACAATTTGAAAGAAA
GAAAACAGATTTGAGAACCACATGACATCAAGAATTTCCTACTTAAATCT
GCAAGGACTCAAAAGTGAGGGACCCCAGGGTGGCACCGCAGAGAAACCAG
GAACAAAGCAGTGACATTTACTAGGTCTTCACCGGACTTTTTGGTGTAAA
ATGGTTGAATCAGATCTGGAATGACAAACAGAAGTTGAGGGCAGTGTCTT
CCCAGAACTGGTTTCTGCTGGTGGGGGAAGGGGCCACAACACACTCACTC
ACTCTTTTTATTCAGCATTCACCGCCTCTCTGGGCAAAGCAACTGACCCT
CGTCTCAGTGTTATCTTCTGTAAGATGACCACTTCCCAACCCTGAGGACA
GCAGCCACTTACTTTCACATTTCAGTCGTTTTCAACCCTGTGAAATTAGG
TATTACTACCATTATCAAGGTGAATCAAAAGAATTGCAGCTTCCCACCGG
AGGCATTCTTTCTTTTGAGATGGGGTCCCTCTGTGAAACCCTGGCTGACT
CAAACTCAGAGACCCATCCCACTTGCTTGCAGGCCCCTTTTACAGGTGTC
ACACTAAGCATTCTGAACAATTAAGTATGGCTTGAGAATTGTGTTACCGT
TCTTCCCAGTCAGTCAGTCTTGTCTTATCATCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_g04.g1 MSMg01no275_g04.g1 CHROMAT_FILE:
MSMg01no275_g04.g1 PHD_FILE: MSMg01no275_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:07 2005
         (355 letters)



>mm_chr6_148890236_148890990
          Length = 755

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggcaaagcaactgaccctcgtctcagtgttatcttctgtaagatgaccacttccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tctgggcaaagcaactgaccctcgtctcagtgttatcttctgtaagatgtccacttccca 260

                                                                       
Query: 61  accctgaggacagcagccacttactttcacatttcagtcgttttcaaccctgtgaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctgaggacagcagccacttactttcacatttcagtcgttttcaaccctgtgaaatta 320

                                                                       
Query: 121 ggtattactaccattatcaaggtgaatcaaaagaattgcagcttcccaccggaggcattc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtattactaccattatcaaagtgaatcaaaagaattgcagcttcccaccggaggcattc 380

                                                                       
Query: 181 tttcttttgagatggggtccctctgtgaaaccctggctgactcaaactcagagacccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcttttgagatggggtccctctgtgaaaccctggctgactcaaactcagagacccatc 440

                                                                       
Query: 241 ccacttgcttgcaggccccttttacaggtgtcacactaagcattctgaacaattaagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacttgcttgcaggccccttttacaggtgtcacactaagcattctgaacaattaagtat 500

                                                                  
Query: 301 ggcttgagaattgtgttaccgttcttcccagtcagtcagtcttgtcttatcatct 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcttgagaattgtgttaccgttcttcccagtcagtcagtcttgtcttatcatct 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)