BAC Information

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BAC

Clone NameMSMg01-277A09
Chromosome6 (Build37)
Map Location 8,524,017 - 8,524,391
singlet/doubletsinglet
Overlap geneGlcci1
Upstream geneLOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik
Downstream geneIca1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277A09.T7 (MSMg01no277_a09.b1)MSMg01-277A09.TJ (MSMg01no277_a09.g1)
ACCAG415040AG415041
length795761
length of high quality
(start - end)
44 (428 - 471)374 (388 - 761)
definitionCHROMAT_FILE: MSMg01no277_a09.b1 PHD_FILE: MSMg01no277_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:05 2005CHROMAT_FILE: MSMg01no277_a09.g1 PHD_FILE: MSMg01no277_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGGGGANNANNNNNNNNNCCCCCCNNNNCNNCCTTTAAANANNAAA
TTTATAATTGCGGCGGCAGAAGAGTGANTATTTCCCAAAANGANNGGANN
NGNGGGGGGTTACAAAAAAAGANGGGGNNGNNNNNGGNGNGNGGNGNGNG
GNNGGNNNGGGTTTTTTTCCCCCNNNNNGGGGGNNNNGGNNNANNNNNNN
NNGNNNNNNNGNGNNNNNNNNNGNGNNNNNGANNGNGGNNNNNNNNNNNN
NNGAGNNGNNGAGNNNNNNNNNNNNNNGGNNNNNNGNNNNNNNNNNNNTT
TTTTTTGATGTGNNGTGTTNTNTNTNTNGAATTNTGTGAAAGAGAANATN
NNNNTNNNTNNAAGTTTTCATTTTATAAAANANANNNANNAGANANNNNN
NNNANTTTTTTTTTTTTCACCCCCCTTTCCTGGTTTCCCCTCTGAAAACC
CCCATCCCATCACCCCTCAAAAGAAAAAAAAAAAACCCGGGGGGGGGGGG
TGTCCCTGGCATTTCCCTGTACCGGGGCATAGAGCCTTTACAGGGCCTTT
CCTCTCATTGATGACTGGAAAGGCCATCCTCTGCTAAATTTGATGATGGA
GAAAAAAGTCACTACATGAGTACTCTTTGGTTGGTGGTTTAGTTCCTGAG
AGGTCTTGGGGTACTGGTTGGTTAATATTGTTGGTTATCATATGGGGATG
GATTTTTTTTTTTTTTTTGGGGAACTTTCAAGATAATTAATTGGGAATAC
TGTGCTAAGATCAATGATAGGAAGAGAAGTATGGGTATTGGAGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGGTAATGTGCTTGCTAAACAGC
TGAGGAGTGTCTTATTTAATTGTTCCATGAGTAGAAGGTACCTTAAAATA
TCTGCTTTGTGCTTTGGGTATTTTGGGTCTTTTTCCGCATGAAGAAATTT
TAAAATGGGCTTTTTATTTTCCCCCAAGAAATTTGTACTAACACATCTTA
TGGAACAGATCTGAAAATTGCTGCTCTAGAGTGATGAATCTTAGAGTTAG
ATCTGATACCATGACCTAATAGCATATTGCTAGTTCATAGAGATAAGGAT
AATTCAACACTAGGATATATTTATATCCCCCACCCCCTCCGAAAGTCAAA
GGAGAGAAAAAAACAAATTGTATTTTCTTGAGGTTTAATAACATTTGATA
AAACATAGTATCGATTTGTGGTTATAAAAGTTCTTAATTAAATAGAAAAC
AGCAAAATTTTCTATTGTAACTGTGGGTGTACTAAGTTCTCATCTTTACA
GTACTGGCTGCATTAATGTCAAGATAGAAATCACCACCGAGGTCAACATT
TATTGTCATGTTACATTAGGCAATAAGAAAAAATCACTATTGTATATAGG
AAATCAAAATGAATAGCTAAACTATGAAAACTAATTATGAGATCATTAAT
ATAGATAATACTAACAAGTGACATAGAACATGTAAAACAAAAGAGTGTGT
TGCTGTTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_a09.g1 MSMg01no277_a09.g1 CHROMAT_FILE:
MSMg01no277_a09.g1 PHD_FILE: MSMg01no277_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:05 2005
         (374 letters)



>mm_chr6_8523817_8524591
          Length = 775

 Score =  688 bits (356), Expect = 0.0
 Identities = 371/376 (98%), Gaps = 3/376 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgaaagtcaaagg-agagaaaaaaacaaattgtattttcttgaggtttaataacattt 59
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgaaagtcaaaggca-agaaaaaaacaaattgtattttcttgaggtttaataacattt 259

                                                                       
Query: 60  gataaaacatagtatcgatttgtggttataaaagttcttaattaaatagaaaacagcaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gataaaacatagtatcgatttgtggttataaaagttcttaattaaatagaaaacagcaaa 319

                                                                       
Query: 120 attttctattgtaactgtgggtgtactaagttctcatctttacagtactggctgcattaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attttctattgtaactgtgggtgtactaagttctcatctttacagtactggctgcattaa 379

                                                                       
Query: 180 tgtcaagatagaaatcaccaccgaggtcaacatttattgtcatgttacattaggcaataa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtcaagatagaaatcaccaccgaggtcaacatttattgtcatgttacattaggcaataa 439

                                                                       
Query: 240 gaaaaa-atcactattgtatataggaaatcaaaatgaatagctaaactatgaaaactaat 298
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaaaacatcactattgtatataggaaatcaaaatgaatagctaaactatgaaaactaat 499

                                                                       
Query: 299 tatgagatcattaatatagataatactaacaagtgacatagaacatgtaaaacaaaagag 358
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatgagatcattaatataggtaatactaacaagtgacatagaacatgtaaaacaaaagag 559

                           
Query: 359 tgtgttgctgttagaa 374
           ||||||||| ||||||
Sbjct: 560 tgtgttgctattagaa 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)