BAC Information

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BAC

Clone NameMSMg01-277N15
Chromosome6 (Build37)
Map Location 146,669,519 - 146,821,123
singlet/doubletdoublet
Overlap geneStk38l, LOC621842, Arntl2, 1700023A16Rik
Upstream geneRassf8, Bhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Downstream genePpfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277N15.T7 (MSMg01no277_n15.b1)MSMg01-277N15.TJ (MSMg01no277_n15.g1)
ACCAG415638AG415639
length720719
length of high quality
(start - end)		329 (388 - 716)333 (387 - 719)
definitionCHROMAT_FILE: MSMg01no277_n15.b1 PHD_FILE: MSMg01no277_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:03 2005CHROMAT_FILE: MSMg01no277_n15.g1 PHD_FILE: MSMg01no277_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,820,795 - 146,821,123)(146,669,519 - 146,669,851)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACCACGGGATTGCAAGTTATCTCAGAGATGCAAAACAAACAT
GGTAGTACACATCTGAGATCTCTCACCCTGGAGGTTTGGAGGCAGGAAGA
CTGCCACAAGTTTGACACCAGCCTGGACTCCATAGCAAGGCCAGGCGTGG
CTGCATAGTGAGATCCTGTTTTGCAATACAATAAATAAATAAATAAGCAA
CCTCAAACAAATAAACAAACAGAAAGAAACCCTTTCAACTTTTACTCCTG
TTTCTTTTTCTTTAGGATGGTTTTCCTGTTCTCTCCATAAAAATACCCAT
GATTCAATGCAGGCGTATTTTTCTGGACCACACTCTACAGCTCTCTGCCC
GTTCGCCTTCCACTCCTTCATCTATTATACAACTAACTGCCATAAAGTCC
ATCTCCCCATGTTTACCTGTCCATCCCTCCCTTTTCTTCCCCACCCAGAC
CACCAAATGGGTTGCTTGCCGTTTGAGGCAGGACTCAGGGCTGATCTCTG
ATTTGCTGTGAAGCTGAGAATGATTTTGACCTTCTGATCCTCTCGCCCCA
CCTTCTAAGTGCTGTGGTCACAGGCATGCACCACCATGTCTGGTTTTGCA
CCATGCTAAGGATTAAAGCCAGGGCCTAGAGCATGCTATGAGACACTCCA
CAAACTGAGCTACATCCCAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAATCTGGGCTATACAGAG
AAACTCTGTTTCGAAAAAACCAAACCAAACAAACAAACAAACAACAACAA
CAACAAAAATAAGGCAAAAAAATCTTAACTTAAGTGCTACCTACTATACA
GTAACATCACAAATTCACTTTTTAGCATTTTGATATGCATATATTGGCAT
AATTGATTTCCCCTGTAGATGTAGATATTTTTCTAAAATGCATTTCAGAA
TATTATCCTGAAAAGTCATCCACAGAATTTGCAAAAAGGTTTCAGTTTGG
ATAACATCAATGACCTCCTAAGGGAACCCGCCCACGCATGATCTCAAGCT
ATGCACAGAGGTCAAACTTCTGCTCAAGTCAACATTCTAGATTAGTTCAC
ACTATCACAGTGTTGAGAAAAGGCATACATATTTGGAAACATGAATTTTC
TATCAAACAAACAATAAGCTATTTTTGATTCTACACACTCAAGTTGGTAT
GCATATAATATATACATATAAGTGTATATATAAGATGCATATAGTATAAG
GAGTACAGGCCTCTGCCAAGCTTGTTGGATCACAGTTAAACCTGCCATTT
GCAATGACTATATGATTATGTAAGTAGAACAAATTTCCTCACAAATACCT
GAATATCAAATTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_n15.b1 MSMg01no277_n15.b1 CHROMAT_FILE:
MSMg01no277_n15.b1 PHD_FILE: MSMg01no277_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:03 2005
         (329 letters)



>mm_chr6_146820790_146821518
          Length = 729

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctctctgcccgttcgccttccactccttcatctattatacaactaactgccataaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagctctctgcccgttcgccttccactccttcatctattatacaactaactgccataaag 275

                                                                       
Query: 61  tccatctccccatgtttacctgtccatccctcccttttcttccccacccagaccaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tccatctccccatgtttacctgtccatccctcccttttcttccccacccagaccaccaaa 215

                                                                       
Query: 121 tgggttgcttgccgtttgaggcaggactcagggctgatctctgatttgctgtgaagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgggttgcttgccgtttgaggcaggactcagggctgatctctgatttgctgtgaagctga 155

                                                                       
Query: 181 gaatgattttgaccttctgatcctctcgccccaccttctaagtgctgtggtcacaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gaatgattttgaccttctgatcctctcgccccaccttctaagtgctgtggtcacaggcat 95

                                                                       
Query: 241 gcaccaccatgtctggttttgcaccatgctaaggattaaagccagggcctagagcatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gcaccaccatgtctggttttgcaccatgctaaggattaaagccagggcctagagcatgct 35

                                        
Query: 301 atgagacactccacaaactgagctacatc 329
           |||||||||||||||||||||||||||||
Sbjct: 34  atgagacactccacaaactgagctacatc 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no277_n15.g1 MSMg01no277_n15.g1 CHROMAT_FILE:
MSMg01no277_n15.g1 PHD_FILE: MSMg01no277_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:03 2005
         (333 letters)



>mm_chr6_146669319_146670051
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgatctcaagctatgcacagaggtcaaacttctgctcaagtcaacattctagattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgatctcaagctatgcacagaggtcaaacttctgctcaagtcaacattctagattagt 260

                                                                       
Query: 61  tcacactatcacagtgttgagaaaaggcatacatatttggaaacatgaattttctatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacactatcacagtgttgagaaaaggcatacatatttggaaacatgaattttctatcaa 320

                                                                       
Query: 121 acaaacaataagctatttttgattctacacactcaagttggtatgcatataatatataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaacaataagctatttttgattctacacactcaagttggtatgcatataatatataca 380

                                                                       
Query: 181 tataagtgtatatataagatgcatatagtataaggagtacaggcctctgccaagcttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataagtgtatatataagatgcatatagtataaggagtacaggcctctgccaagcttgtt 440

                                                                       
Query: 241 ggatcacagttaaacctgccatttgcaatgactatatgattatgtaagtagaacaaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatcacagttaaacctgccatttgcaatgactatatgattatgtaagtagaacaaattt 500

                                            
Query: 301 cctcacaaatacctgaatatcaaattccttctt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 cctcacaaatacctgaatatcaaattccttctt 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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