BAC Information

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BAC

Clone NameMSMg01-278P11
Chromosome6 (Build37)
Map Location 134,700,889 - 134,701,416
singlet/doubletsinglet
Overlap geneDusp16
Upstream geneLOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884
Downstream geneCrebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278P11.T7 (MSMg01no278_p11.b1)MSMg01-278P11.TJ (MSMg01no278_p11.g1)
ACCAG416458AG416459
length734979
length of high quality
(start - end)		695 (40 - 734)---
definitionCHROMAT_FILE: MSMg01no278_p11.b1 PHD_FILE: MSMg01no278_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:26 2005CHROMAT_FILE: MSMg01no278_p11.g1 PHD_FILE: MSMg01no278_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGG
AATTCAGTGGGGCCGAAGTGTAACATCATAGTTCAGTGGGGAAAGGCTCC
TACTATACACACAAGAAAAAGGTGACCTGAACTCAATCTTCACAACCCGA
ATGAAGGTAGAAGTAACCTCACAGAGTCATTCGCTCACCTCCATATATGT
GCTATGACACACTCCCCTTCTACAAATAATATATACAGCCAGGAGCTAGA
GCTAGAGCACAGTGCTCGCCTAGTGTCCACAAAGCTCTGGATTTAGTCCC
CAATAGCACATAAAATGGGTGTGGTGGCACACACCTACCTGCAATTCCAG
CATTCAATAGGCTGACACAGAAGGGTTGTGAGGTCAAAGTCAGCTTGGGT
TGCACAACTTGATTAAAAACAACGCACAGCAATGGAGATAGATTTAGAGG
ATTAATAAGGAGACTAAAGGGTTTTACTTTTTTTCTGTAAGAAGGAAAAA
TGGGAATTTAGACAAGTTGGTAGTAAATTATACATGCTCTTTAAACATGA
ATTTCTTTAGATGTGGTGGGCATTGTGAGCTGTTGGAGATTTGGCTGCAA
CATCTGTCACCTCTCAGTCACCACTAGGTCCTTTGCCTGTCTGTCAGAAG
TCTTCATCTTCTATTACCTCAGTCTTTCTAACACCATCTCTTTCAGATGC
TCCAGGAGCCTCTAAATTGTCTCGCATTCTCTGC

TGGGCGTGCCCGCCTGTTCCCAAACAACATCTGCTAGGTGACACCTATTA
GATTTGCCCCAACAAGAGATTCCACANGNNGTGCATGCCGCGCCGCACCA
CACATTTATACACCCACACACTTCTTTTCCTCGTCAGATANAATTGTTTC
CCAAAAGAATGGGTAGTAGTGGAATAGGTGATATGTAATGGGTATAGGTG
GATGGGGTAGTGGGTATGGTNTTTTTTTATTTATTTTTTTTTTTTTTTTT
TTTGTTTTATNGTTTTTTTTTTTTTTATTTTTTTTTCTTTTTTTTNTCGT
TTATTTTTTTTTTTTTATTTAATTTTTATTTATAATGTTATTTTATGTTT
ATATTTATTTTGTTTTATTGAGGGAAGAAAAAAAGAATGTTTTTTTTTTT
TTTTGTTTCACTTTTTTATGAGAGGAAAGAGAAAAAATTTTTGGAGGTAA
GTTTCCCCCAAACGGGGCACCCCCGGAGGATAGATTTTTTTTTTTGTTTG
TTTTTTTTTTTTNTCCTTTTTAAAAATTTTTATNTGNTAATATTTTTGGT
GGTGTGGGCGGTGTTGTTTTTTATATTTTTTTTTTTCTTTTTTCTCTCTC
TTTCTTCCCCTCCGCCCTCCTTTCCTCCCTCCTTTACTCCCTCTCCCTTC
TCTCCCCCTCTCTTTCTGTCTTTCCCCCTCCCTCCCCCTCTCCTTTTTTT
CCGCCCCCTCCTTCTTCCCTCCTCCCGTCCCTTTCTCCTCTTCTCTCCCC
TTCTCTTTTCCTCCCCCCCCTCCCTCTTTTTTCTCCTTCTCTTTTTCTTC
TTCCTCCTCTCACCCTCTTTTTTTTTCTCCCTTCCTTCTTCTCTCCCTAT
TTTTCTCTCCTCCCTTCTATTATTCTCCCACCCGCCCCCTTCTTCCTGTA
CTTTCCCTTTATCTTATTCTCTTCATCTATATTATCCTACTTCCCTTTTT
ATTCTCCTCCCCTCTCCTCCCATCTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_p11.b1 MSMg01no278_p11.b1 CHROMAT_FILE:
MSMg01no278_p11.b1 PHD_FILE: MSMg01no278_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:26 2005
         (695 letters)



>mm_chr6_134700322_134701416
          Length = 1095

 Score = 1013 bits (524), Expect = 0.0
 Identities = 527/528 (99%)
 Strand = Plus / Minus

                                                                        
Query: 167  gacacactccccttctacaaataatatatacagccaggagctagagctagagcacagtgc 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 gacacactccccttctacaaataatatatacagccaggagctagagctagagcacagtgc 1036

                                                                        
Query: 227  tcgcctagtgtccacaaagctctggatttagtccccaatagcacataaaatgggtgtggt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tcgcctagtgtccacaaagctctggatttagtccccaatagcacataaaatgggtgtggt 976

                                                                        
Query: 287  ggcacacacctacctgcaattccagcattcaataggctgacacagaagggttgtgaggtc 346
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 975  ggcacacacctacctgcaattccagcattcagtaggctgacacagaagggttgtgaggtc 916

                                                                        
Query: 347  aaagtcagcttgggttgcacaacttgattaaaaacaacgcacagcaatggagatagattt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  aaagtcagcttgggttgcacaacttgattaaaaacaacgcacagcaatggagatagattt 856

                                                                        
Query: 407  agaggattaataaggagactaaagggttttactttttttctgtaagaaggaaaaatggga 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  agaggattaataaggagactaaagggttttactttttttctgtaagaaggaaaaatggga 796

                                                                        
Query: 467  atttagacaagttggtagtaaattatacatgctctttaaacatgaatttctttagatgtg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  atttagacaagttggtagtaaattatacatgctctttaaacatgaatttctttagatgtg 736

                                                                        
Query: 527  gtgggcattgtgagctgttggagatttggctgcaacatctgtcacctctcagtcaccact 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  gtgggcattgtgagctgttggagatttggctgcaacatctgtcacctctcagtcaccact 676

                                                                        
Query: 587  aggtcctttgcctgtctgtcagaagtcttcatcttctattacctcagtctttctaacacc 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  aggtcctttgcctgtctgtcagaagtcttcatcttctattacctcagtctttctaacacc 616

                                                            
Query: 647  atctctttcagatgctccaggagcctctaaattgtctcgcattctctg 694
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  atctctttcagatgctccaggagcctctaaattgtctcgcattctctg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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