XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTC
ATTCTTACACACACACACACACACACACACACACACACACACACGCACAC
ACACATGCACTCTCACACCCACACACACATATGTAAAAATTAATAGACAT
AAAGGAACCGGTCCTGTTAAGCCTTTCCTTTATCTTTAGTTGACTACTAT
CCCAGCCATTGTAAACTGCATCACCCTCCCTCTCCTATCCCAGTGCTGGA
AGATAGTTCTAGCTCATTTTTATTGGGCCCCCATACATGCAATGCATATA
TGACAATCTAGCTGTCTACCCTCAGCTAGCCTCCTGTTTCAGGTTCCTGA
GAGCTAAAGTAAGATATGCACCTTCATACCCAGAGGTTATTGTAGCCTTA
CCCTCTGTTCACTTCTTTTCACAGATTCCTGTGTAGATGCTTGGGCATTG
GCCTTTCAAAGAGATTTCTACTAATTATTTCTTTGTTCGATTTGCGTATG
CAGCAAGTGCGTATGCGTTCACACTGGACTGGCATGGGCCTGCAGGATCA
GCGCTCCCCAGCTTTTCCTTTCCAAGGACTTTGTCAACATTGAGTGTGTG
TTCTGGCATCTTGGATTTGCCCTGGTGTGATATTTTTAATAATGCCAAAA
GATACAAAAAGCCTTTACACTTAATTAAGCCAGTTATTAAGCCCACATGT
AGACACCAGCAAAGTGACTATATTCTCACATGAATGAATTAACTAGGTT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAACCACCTTACAAGGAACAT
GAATCAAGCAGAAGACAGAAGAGTAGGACTCAGGGATAAAGTAGAGAATT
TGGATAAATTATCAGAGGAAGAAAGGGAAGCAGAAATGATGTCATTTTCT
TATAATCTCAAAGATGAAAGAAATAATCAAAAATTTACAAAAGAGCAAAT
ATACTTTAAAATCTTAGGTGTTATGAAGTTGAGTTGTAATTAGCCAATTT
TTTATTTAAACCTCTGCTGCCCTCAGTTCTCTTGGTGGGATTTGGAACTG
AAGGTCAACTTAAAGGGGATTTTTTTCTTTGCCCCACCCGGGTTACAATT
CACTCCTGCTGATAAGCTTTCCCAGGTTAAAGAACATCAGGGTTTCTTTG
TGTTCCTAGGAAAACCCAGTATGCTCCTTGATACAGTTCTACAATAAAGG
GATCAGGTGCAAGGAAGAAAAACTATAGCACATCCTGGTGTCTCTGAAGA
CCCAGGCTCAGCAATCTAGAGAAAGCCAAGGGGTTGTTATATTCCATTTG
CAACATGGCTACCTTGCTAACCCTCTGATGGACTTCACAGGGTCTAGACT
TTCCATCTTCTTCTGGAGTGATTGCTGCATTTGCAGTACCCTGGGCTCTG
TTACTGTGGCATTTCATTACAGGGGTTTCGTGTGTTCACCCAAGAGCAGG
GAGTAGGGTCATAGGA

Query= MSMg01no280_f03.b1 MSMg01no280_f03.b1 CHROMAT_FILE:
MSMg01no280_f03.b1 PHD_FILE: MSMg01no280_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:08 2005
         (239 letters)



>mm_chr6_95479725_95480363
          Length = 639

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   cacacacacatatgtaaaaattaatagacataaaggaaccggtcctgttaagcctttcct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cacacacacatatgtaaaaattaatagacataaaggaaccggtcctgttaagcctttcct 380

                                                                       
Query: 62  ttatctttagttgactactatcccagccattgtaaactgcatcaccctccctctcctatc 121
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttatgtttagttgactactatcccagccattgtaaactgcatcaccctccctctcctatc 320

                                                                       
Query: 122 ccagtgctggaagatagttctagctcatttttattgggcccccatacatgcaatgcatat 181
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 319 ccagtgctggaagatagttctagctcatttttattgggcccccatacatgtaatgcatat 260

                                                                     
Query: 182 atgacaatctagctgtctaccctcagctagcctcctgtttcaggttcctgagagctaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgacaatctagctgtctaccctcagctagcctcctgtttcaggttcctgagagctaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no280_f03.g1 MSMg01no280_f03.g1 CHROMAT_FILE:
MSMg01no280_f03.g1 PHD_FILE: MSMg01no280_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:08 2005
         (291 letters)



>mm_chr6_95311226_95311916
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaccaccttacaaggaacatgaatcaagcagaagacagaagagtaggactcaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaaccaccttacaaggaacatgaatcaagcagaagacagaagagtaggactcaggga 260

                                                                       
Query: 61  taaagtagagaatttggataaattatcagaggaagaaagggaagcagaaatgatgtcatt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagtagaggatttggataaattatcagaggaagaaagggaagcagaaatgatgtcatt 320

                                                                       
Query: 121 ttcttataatctcaaagatgaaagaaataatcaaaaatttacaaaagagcaaatatactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttataatctcaaagatgaaagaaataatcaaaaatttacaaaagagcaaatatactt 380

                                                                       
Query: 181 taaaatcttaggtgttatgaagttgagttgtaattagccaattttttatttaaacctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatcttaggtgttatgaagttgagttgtaattagccaattttttatttaaacctctg 440

                                                              
Query: 241 ctgccctcagttctcttggtgggatttggaactgaaggtcaacttaaaggg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccctcagttctcttggtgggatttggaactgaaggtcaacttaaaggg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)