Query= MSMg01no288_l02.b1 MSMg01no288_l02.b1 CHROMAT_FILE:
MSMg01no288_l02.b1 PHD_FILE: MSMg01no288_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:50 2005
(702 letters)
>mm_chr6_138714590_138715691
Length = 1102
Score = 1315 bits (680), Expect = 0.0
Identities = 692/698 (99%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcaatcatatatagataaacaatatattatataattatataaaaagatatata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gaattcatcaatcatatatagataaacaatatattatataattatataaaaagatatata 1009
Query: 65 tttacataaatttatatcattgactaattcaagtcaatgtatgcatgtttatgtatgtat 124
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1008 tttacataaatttatatcattgactaattcaagtcaatgtatgcatgtt----tatgtat 953
Query: 125 gtatgtatgtatatgtatgcatgtatgtatgtatctatctatctatctataagctgtgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gtatgtatgtatatgtatgcatgtatgtatgtatctatctatctatctataagctgtgct 893
Query: 185 tcaaactaagtttaggttaatccagttgtagccccttgttcttacattaagtgtatatga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tcaaactaagtttaggttaatccagttgtagccccttgttcttacattaagtgtatatga 833
Query: 245 cttttagtaatattaatatttctgttccctaactaaatcggagatacaaatattccaatt 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 832 cttttagtaatattaatatttctgttccctaactaaatccgagatacaaatattccaatt 773
Query: 305 gcattcttgaacagatgtcgttcttcctgactctgaaatatgctcagagcaatgatgaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcattcttgaacagatgtcgttcttcctgactctgaaatatgctcagagcaatgatgaaa 713
Query: 365 ttatgggtgcgacagacttgtgcttgatgtctatgctctgccactcaacaagaaagtacc 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 712 ttatgggtgcgacagacttgtgcttgatgtctatactctgccactcaacaagaaagtacc 653
Query: 425 agcctgctgcttacaaggttccttcattaaggaacagtgcttggtgaagtgacacaccta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agcctgctgcttacaaggttccttcattaaggaacagtgcttggtgaagtgacacaccta 593
Query: 485 actgcatcaacagcagcaattccttccctggtagtatgtaaatggaaactgggtgttgat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 actgcatcaacagcagcaattccttccctggtagtatgtaaatggaaactgggtgttgat 533
Query: 545 ataccagactcttcttcctttacggaaacataggtgactctcacatattgttcttaccta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ataccagactcttcttcctttacggaaacataggtgactctcacatattgttcttaccta 473
Query: 605 atcttgggcatgtgtagaaattcatactcctaaaagaacagctagttggtaactcaagaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcttgggcatgtgtagaaattcatactcctaaaagaacagctagttggtaactcaagaa 413
Query: 665 cagctagtaactcaatactggatacaattgcttgagta 702
||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cagctagtaactcaatactggatacaattgcttgagta 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no288_l02.g1 MSMg01no288_l02.g1 CHROMAT_FILE:
MSMg01no288_l02.g1 PHD_FILE: MSMg01no288_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:50 2005
(675 letters)
>mm_chr6_138677859_138678933
Length = 1075
Score = 1203 bits (622), Expect = 0.0
Identities = 663/680 (97%), Gaps = 8/680 (1%)
Strand = Plus / Plus
Query: 1 tctctgtctgaggaaaatacttgtgaagttataatgtctgggtaaaaatgacaaaacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tctctgtctgaggaaaatacttgtgaagttataatgtctgggtaaaaatgacaaaacaat 258
Query: 61 tctccaggctccttcaatgtttctgcacacattcttagccgagacatgagcagctgtcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctccaggctccttcaatgtttctgcacacattcttagccgagacatgagcagctgtcac 318
Query: 121 tcattttaaacatagatggagaggcaatagccttggaagatatacatggtaccgtttgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcattttaaacatagatggagaggcaatagccttggaagatatacatggtaccgtttgat 378
Query: 181 gagagagtaggtttgcttgttatagacaactgagataatatctctggagcaaatctttcc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaaagtaggtttgcttgttatagacaactgagataatatctctggagcaaatctttcc 438
Query: 241 atgtttgcttaaaaaaaaaacccaccactaccaccaccaacaaaacaacatattaaaaaa 300
|||||||||||||||||||||| ||||| |||| || ||||||||||||| | ||||||
Sbjct: 439 atgtttgcttaaaaaaaaaacc-accacgaccaacaacaacaaaacaacaga--aaaaaa 495
Query: 301 a-----caccttaaacctctgttgttgaggtcattagttataagagaaatccatttcaag 355
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 496 aaaaaacaccttaaacctctgttgttgaggtcattagttgtaagagaaatccatttcaag 555
Query: 356 gattgctttaacttaaacctcctgtcatgaactttgggacaaggatctggccaagaaaat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gattgctttaacttaaacctcctgtcatgaactttgggacaaggatctggccaagaaaat 615
Query: 416 ttgtacaaataggcagctcttgttgtttactgtgctttaagtgctttgcctctgactctg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgtacaaataggcagctcttgttgtttactgtgctttaagtgctttgcctctgactctg 675
Query: 476 gcttctcatggtcttcaccaccattcacaaaattgtgaaggctaataaatttataattat 535
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gcttctcatggtcttcaccgccattcacaaaattgtgaaggctaataaatttataattat 735
Query: 536 ttagaaatgaaagctagtctgagaattatctttcaaaaaaggtaaaatctcggctgtttc 595
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 736 ttagaaatgaaagctagtctgagaattatctttcaaaaacggtaaaatctcggctgtttc 795
Query: 596 acttgttccttactattgtagatataattctgaatgaattattagggtggtcattttttg 655
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 796 acttgttccttactattgtagatataattctgaatgaattattagtgtggtcattttttg 855
Query: 656 ttgttatattaatggaaaca 675
||||||||||||||||||||
Sbjct: 856 ttgttatattaatggaaaca 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
