Query= MSMg01no290_d02.b1 MSMg01no290_d02.b1 CHROMAT_FILE:
MSMg01no290_d02.b1 PHD_FILE: MSMg01no290_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:40 2005
(604 letters)
>mm_chr6_101829914_101830917
Length = 1004
Score = 998 bits (516), Expect = 0.0
Identities = 584/625 (93%), Gaps = 33/625 (5%)
Strand = Plus / Plus
Query: 4 ggaattccaccatgatcatatatatatatatatattaattcccctttgtcccttgataag 63
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 189 ggaattccaccatgatcatatatatatc--------aattcccctttgtcccttgataaa 240
Query: 64 aagattccagattttgacaaaggctaaatggccaaatggaagttgccaaacctgtgataa 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagattccagattttgacaaagactaaatggccaaatggaagttgccaaacctgtgataa 300
Query: 124 tttgccaatagcccatgtgcttcaggaagatgttcctatatgacctctgggaaatgacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgccaatagcccatgtgcttcaggaagatgttcctatatgacctctgggaaatgacag 360
Query: 184 taccagttctgatggctactgctcatcatgccagcctcagcatgggggggc-----agag 238
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 taccagttctgatggcaactgctcatcatgccagcctcagcatgggggggggggggagag 420
Query: 239 agagagagagagagagagagagagagagagagagagagagag-gag-------------- 283
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 480
Query: 284 ---gggacttccttctcctttccccagaatgtccagaaagctttacagttttagatggta 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaggggacttccttctcctttccccagaatgtccagaaagctttacagttttagatggta 540
Query: 341 aggattctacttaaagccacaactattgaagagaaaatggaaaatgcctagagcaataaa 400
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 541 aggattctacttaaagccacaactattgaagagaaaatggaaaatgcctaaagcaataaa 600
Query: 401 taacccattgagatagagtaccaaccaccttcactctcttttaagtgtctcagtgctaga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taacccattgagatagagtaccaaccaccttcactctcttttaagtgtctcagtgctaga 660
Query: 461 aaggcacagaggaccagcgctgttgttgctgaatggacatgtcatgttatatatcatgta 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaggcacagaggaccagcgctgttgttgctgaatggacatgtcatgttatatatcatgta 720
Query: 521 atcttgactaccatttggatataagatg-catatcactaanattggaaacttagagagaa 579
|||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 721 atcttgactaccatctggatataaga-gacatatcactaaaattggaaacttagagagaa 779
Query: 580 ggagagggatagagggatggggaga 604
|||||||||||||||||||||||||
Sbjct: 780 ggagagggatagagggatggggaga 804
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 234 cagagagagagagagagagagagagaga 261
||||||||||||||||||||||||||||
Sbjct: 977 cagagagagagagagagagagagagaga 1004
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 2
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_d02.g1 MSMg01no290_d02.g1 CHROMAT_FILE:
MSMg01no290_d02.g1 PHD_FILE: MSMg01no290_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:40 2005
(637 letters)
>mm_chr6_101899751_101900787
Length = 1037
Score = 909 bits (470), Expect = 0.0
Identities = 513/533 (96%), Gaps = 10/533 (1%)
Strand = Plus / Minus
Query: 99 aaaccatgtcactgaaaacaatcagtttcttgtaacattgggtgttatttgtcaacccta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 aaaccatgtcactgaaaacaatcagtttcttgtaacattgggtgttatttgtcaacccta 978
Query: 159 agtattgttgagatttcagttagaaagaaaaattttattttaaactatgtttctgtagat 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 agtattgttgagatttcagttagaaagaaaaattttattttaaactatgtttctgtagat 918
Query: 219 tatttgtacttgagatcaatataagtccatagagaggtcagaaaacaaatactagggcca 278
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tatttgtacttgatatcaatataagtccatagagaggtcagaaaacaaatactagggcca 858
Query: 279 gtgtaacacatacctttattcctatcactcagaagacgaaagcaggcaaatttctatgag 338
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gtgtaacacacgcctttattcctatcactcagaagacgaaagcaggcaaatttctatgag 798
Query: 339 ttcataactactctggtctccatgcaaggttcaggccaggaaagactgagagtgacacta 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttcataactactctggtctccatgcaaggttcaggccaggaaagactgagagtgacacta 738
Query: 399 tgcctcaataactaacataaaataaaattttgaaagaaagaaattcgatgggagaagaga 458
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtctcaataaccaacataaaataaaattttgaaagaaagaaattcgatgggagaagaga 678
Query: 459 tactgagaagagacttgatgcaaccctgactctgttccaacgtctaccttgatgaggctc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tactgagaagagacttgatgcaaccctgactctgttccaacgtctaccttgatgaggctc 618
Query: 519 anatactcaactgttgttaggtgtgacccagtgacattcttggaaaggaaaaataaagag 578
| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 617 aaatactcaactgttgttaggtgtgacccagtgacattcttggaaaggaaagagagagag 558
Query: 579 agagagggggggggagagagagagacagagagagagaccgagagagagaaaga 631
||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 557 agaga--------gagagagagagagagagagagaga--gagagagagaaaga 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
