BAC Information

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BAC

Clone NameMSMg01-290I16
Chromosome6 (Build37)
Map Location 13,505,675 - 13,505,984
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
Downstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290I16.T7 (MSMg01no290_i16.b1)MSMg01-290I16.TJ (MSMg01no290_i16.g1)
ACCAG419792AG419793
length738751
length of high quality
(start - end)
314 (36 - 349)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no290_i16.b1 PHD_FILE: MSMg01no290_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:08 2005CHROMAT_FILE: MSMg01no290_i16.g1 PHD_FILE: MSMg01no290_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCA
AATGAAGACAGGGTGACAACAAAAATTAATTTTCAAAAACAAAAGTTAAG
GGCTTAATATAATCCCTATATCCCTTTCATGGATTTTTTAACGTAAAAAC
TTTGTCTTAAAATGTTAAGAACACAAGTTCTAAGTAAAAGTTCTGTTGAT
AGCCTGTTCTCTAACATTTTCTAGCATAGATAAGTAAATATAAAAGATTT
GTAGGTGATGATATCCAGGTAATGTGGAAAAATGGGTTGGGTTATAAACT
GCTTTTCCTTATCAACAGCATCTCGTAGAAATTGGATTACAAATCATAGC
TTTAAATAGATTCCCCCCCCCCCCCATGACCTGGTAGCATTAACCTTTTA
GCCGCATTTTAGGAAAATCAAAAATAAGATCTTATGCCAGTTTTTTTTTT
TTCCCCAAAGAAAAAGTGTCCCAGCTCTTTATTCCTGGCAGAGTCACTCT
TCGTCTTGCCTCACTTGAAAGAAGTCTCATGCCCTCTGATCCATATCCAC
TGGCCTTGACTCAGTCCTGACCAAGCCCCTTTGGTTGCTGTTGTCACTGC
GCCTATTCTGTCACTATGAGCAAGTTTCTGCTCCTGTTTGAAGATCTGAC
TCACATGTAGCAATTTGCCTTTCTATGTCATTGAAATTCTCACATACGAA
TATTTCTTTTTCTGAGCTATTATTGATACTTGACTTAC
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAAATTCCACCTCATACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGAAGCTGGCATGGATGTAGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATC
CAGCAATACCTCTCTCTTGTTTACCCCCCCCACACGCCCCAACGGGTAAG
AAGGACACATGCTCCACTATGTTCATAGAAGAAATATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACGATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTACGATACCCAAGATATAAGATACAATTTC
CTATACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_i16.b1 MSMg01no290_i16.b1 CHROMAT_FILE:
MSMg01no290_i16.b1 PHD_FILE: MSMg01no290_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:08 2005
         (314 letters)



>mm_chr6_13505471_13506184
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatcaaatgaagacagggtgacaacaaaaattaattttcaaaaacaaaagttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctatcaaatgaagacagggtgacaacaaaaattaattttcaaaaacaaaagttaa 455

                                                                       
Query: 65  gggcttaatataatccctatatccctttcatggattttttaacgtaaaaactttgtctta 124
           ||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 454 gggcttaatataatttctatatccctttcatggattttttaaagtaaaaactttgtctta 395

                                                                       
Query: 125 aaatgttaagaacacaagttctaagtaaaagttctgttgatagcctgttctctaacattt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 394 aaatgttaagaacacaagttctaagtaaaagttctgttgataggctgttctctaacattt 335

                                                                       
Query: 185 tctagcatagataagtaaatataaaagatttgtaggtgatgatatccaggtaatgtggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 334 tctagcatagataagtaaatataaaagatttgtaggtgatgatatccagataatgtggaa 275

                                                                       
Query: 245 aaatgggttgggttataaactgcttttccttatcaacagcatctcgtagaaattggatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaatgggttgggttataaactgcttttccttatcaacagcatctcgtagaaattggatta 215

                     
Query: 305 caaatcatag 314
           ||||||||||
Sbjct: 214 caaatcatag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)