BAC Information

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BAC

Clone NameMSMg01-291B12
Chromosome6 (Build37)
Map Location 77,251,891 - 77,252,139
singlet/doubletsinglet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291B12.T7 (MSMg01no291_b12.b1)MSMg01-291B12.TJ (MSMg01no291_b12.g1)
ACCAG420189AG420190
length797847
length of high quality
(start - end)
234 (182 - 415)249 (130 - 378)
definitionCHROMAT_FILE: MSMg01no291_b12.b1 PHD_FILE: MSMg01no291_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:48 2005CHROMAT_FILE: MSMg01no291_b12.g1 PHD_FILE: MSMg01no291_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCTTTCTTGTTGTTTCTTACTCCTCCTTTTTCCCCCCAACCNNNCA
ACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTCACCTTTACCAANAAAGAATGGCAGAGAAGCACCTGAAAAAA
TTTTCAACATCCTTAATCATCTTTCCCATGAAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAATATGTCTTATATGGCAACAACGACACATGCTCCACT
ATGTTCATAGCAGCCTTACCCCCCCCTATTCAGAAAATGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGATCTGGAGGGCATCATCCTGAGTGAGGCAACACATTCAC
CAAGGAACTCACACCATATGTACTCACTGATAAGTGGATATTAGCCCCAA
ACCCAGGATACCCCAGAAATAATATACAATTTCCCAAACACATGATACTC
AAGAATAATGAAGACTGAAGTGTGGACACTAATGACCCTCCTTAAAA
CCTCTTTTCCCCTCTTTCTTCCCTTTCCCCCCCCCNNNNNAAANTNNNNN
CCTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTGTTTTAAGAAAAAGA
GGATTTAAAAAATAATTACAAACAAACACAAAGCAAAAACCCTCACCACA
GGCTTACATAACAGATCATGTAAGGGGATCGCCAGGATTTAATAAGGCAC
GAAGTCTGGAGGAAAATAAAATTACAAGAAGTAAATTGATCCTTATATTG
GTTGGACTTCCGAAACTCAGGGAAATTACAGCAAGTGGTCTTGACCTGTG
ATGTGAGTTCCTGAATCAAAAATTTCCCATTAAACTGAAACAATCTGTCA
GTCTGTATGGTTAGGATTTCATANTTTCCCCCCCCCCCCCTTCTCTGCCT
CTCTCTTTGTCTTTATCTTACCCCCCCCGACACAAAAAAAAACTCTGTCT
CTCTCTGTCTCTGTCTCTGTCACTGACTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCACTCCCATTCCCCATTATCTATTCCACCACCCCCT
CAGCTCCTTTCTTACTTCTCTCTCTCCCCGTTCGAATCTTTTGTCCCCTC
TTCTTTTCCTTCAATTACCCACCCTATTGTTCACTTCCTTTTCCGCTTTT
AATGCACCCCTCTTCACACAACCCTATCACACACGCTTAACACATTCTAC
CCTTACACAATGGTTGATTTTATCACCTACTTTCAACACCTATATATTTT
CCCCTCTTCTCTTTCCGCCCTTATATACACCCTCTATATTTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_b12.g1 MSMg01no291_b12.g1 CHROMAT_FILE:
MSMg01no291_b12.g1 PHD_FILE: MSMg01no291_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:48 2005
         (249 letters)



>mm_chr6_77251691_77252339
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttgttttaagaaaaagaggatttaaaaaataattacaaacaaacacaaagcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttgttgttttaagaaaaagaggatttaaaaaataattacaaacaaacacaaagcaaaaa 390

                                                                       
Query: 61  ccctcaccacaggcttacataacagatcatgtaaggggatcgccaggatttaataaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccctcaccacaggcttacataacagatcatgtaaggggatcgccaggatttaataaggca 330

                                                                       
Query: 121 cgaagtctggaggaaaataaaattacaagaagtaaattgatccttatattggttggactt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 329 cgaagtctggaggaaaataaaattagaagaagtaaattgatccttatattggttggactt 270

                                                                       
Query: 181 ccgaaactcagggaaattacagcaagtggtcttgacctgtgatgtgagttcctgaatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccgaaactcagggaaattacagcaagtggtcttgacctgtgatgtgagttcctgaatcaa 210

                    
Query: 241 aaatttccc 249
           |||||||||
Sbjct: 209 aaatttccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)