BAC Information

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BAC

Clone NameMSMg01-293K18
Chromosome6 (Build37)
Map Location 53,466,662 - 53,466,974
singlet/doubletsinglet
Overlap genenone
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293K18.T7 (MSMg01no293_k18.b1)MSMg01-293K18.TJ (MSMg01no293_k18.g1)
ACCAG422058AG422059
length733735
length of high quality
(start - end)
317 (36 - 352)---
definitionCHROMAT_FILE: MSMg01no293_k18.b1 PHD_FILE: MSMg01no293_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:09 2005CHROMAT_FILE: MSMg01no293_k18.g1 PHD_FILE: MSMg01no293_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGGT
TAGTGATAGATACCTAGCCAATGGTTGCTGAATAAAGGAACAGAGCAGAG
GACATGTCAACTGATTTTGCCGTAAACTCGGCAGAAAGTGAACTAAAAGT
GAGAGCAGGCAGCTCAGCTCCTCTACTTCCTCGGGTGCTGCCGTTGAGTC
TATGGCACCTGCGCTCCTCCACAATTCCAGTTGCCTTCTCAACACTAAGG
TTCTTCAGTAGGTCCTGGTGCAATGTGTTCTCCAAACTTCTACTTTCCTC
CACCCCAGTCCCACGGTTACTGCAGCCACTGCAGAGTCTCGCTCTAGCTG
TCTCTTCCTTTTCTCCAGTGCTTGCCCCACAAATTTCCTGTGCTACACCC
TGGTATCCCCCCCCGACAAGAAAAGAAAGATGTTCTTCTGCGGGAAAAAA
AGAAACATCTTTCGCAAGGTTTTGAAGGCCAGGGAGGGTGACAGATGCTA
GTTCTCTGGGAGGATCTGGAGCTCCGTGGCCTTGGCTGCAACGGGCTTTT
GGTAAATAAACAGGTAAGGTCAAGAGTCCCGTGCATGTGCTGTATCTGCC
TTGTGCACTCTAAGTACAGATGACAGAAGCCCAGGACCTCTGGTTTCCTT
TACTGTCTTACTGGCATGAGAGTCACTTCCTTATATCTCTGAAAGATTAC
TGATACCTTTTTGACCCCCACCTTTGATACTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTCCCGAAAAAACAGAAAGGAAGTTAGTAGAATAGAGTGATGTCTCC
GTACATGATATAGACACCCTCTACAGTGCACAGAAGCACATATATTTTAG
AATATGCTGAATCTTACACAGGTACATTAAAAAAAAGAACTAAAACCTCT
ACCAACTTGAAATTAAAAAAAGACATTTATTTTAGAATTCTCTAGGATAC
TCGCAATTTCCTGAATTCCCGTACTCATGATGGCCATATGTTAGCATCTT
ACAAATTTGTATGATCTTTTTTGTTGAGAAAGAAAAATTTGGAAGGAAAA
AAAATTTTTTATAGTTCTCCACAGACGGACCCACATATGNCTGGGGCANG
AANTGAGGNTAACCCCCACAATAACGTAATTGACACATGGGGGGGGGTGG
AGGTTTTGCACATTTTTAGGTACCCCTTTATCTATTTACTTAGAATCTTC
CTAAATATCGCCCTTAGCATATGTGCCAGCATCTGTCCCTGAATCTGCTT
ATTCCCCTAATATTTCATAGAATACTCTCTTTTTGAAAAGCCTCACCTCA
TATTTTCTTCCTCAGCTCATTTGCCATACACCTTTATTAATTGCAGATGA
CGTTTATAATAGAGTCTCAAAATTTGGGGCCACAATAAAAGCTACATATC
CCATCTAAAAAATAAAAGGAGGCCTTGTGGATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_k18.b1 MSMg01no293_k18.b1 CHROMAT_FILE:
MSMg01no293_k18.b1 PHD_FILE: MSMg01no293_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:09 2005
         (317 letters)



>mm_chr6_53466458_53467174
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggttagtgatagatacctagccaatggttgctgaataaaggaacagagcaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcctggttagtgatagatacctagccaatggttgctgaataaaggaacagagcaga 458

                                                                       
Query: 65  ggacatgtcaactgattttgccgtaaactcggcagaaagtgaactaaaagtgagagcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggacatgtcaactgattttgccgtaaactcggcagaaagtgaactaaaagtgagagcagg 398

                                                                       
Query: 125 cagctcagctcctctacttcctcgggtgctgccgttgagtctatggcacctgcgctcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagctcagctcctctacttcctcgggtgctgccgttgagtctatggcacctgcgctcctc 338

                                                                       
Query: 185 cacaattccagttgccttctcaacactaaggttcttcagtaggtcctggtgcaatgtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cacaattccagttgccttctcaacactaaggttcttcagtaggtcctggtgcaatgtgtt 278

                                                                       
Query: 245 ctccaaacttctactttcctccaccccagtcccacggttactgcagccactgcagagtct 304
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 277 ctccaaacttctactttcctccaccccagtcccacggccactgcagccactgcagagtct 218

                        
Query: 305 cgctctagctgtc 317
            ||||||||||||
Sbjct: 217 tgctctagctgtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)