This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-295P12
Chromosome
6 (Build37)
Map Location
102,563,219 - 102,713,440
singlet/doublet
doublet
Overlap gene
none
Upstream gene
EG666084
,
Cntn3
,
EG666123
Downstream gene
Chl1
,
LOC666141
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG666084
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666084
MGI:3649127
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins
pseudo
: _no_value
name
Cntn3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18488
MGI:99534
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG666123
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666123
MGI:3643727
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
pseudo
: _no_value
name
Chl1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12661
MGI:1098266
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666141
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666141
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Cntn3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117938276
GeneID:18488
MGI:99534
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: contactin 3
transcript_id
: NM_008779.2
name
Chl1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110347544
GeneID:12661
MGI:1098266
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cell adhesion molecule with homology to L1CAM
transcript_id
: NM_007697.2
name
Cntn3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:117938277
GeneID:18488
MGI:99534
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
note
: plasmacytoma-associated neuronal glycoprotein
product
: contactin 3
protein_id
: NP_032805.2
name
Chl1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110347545
GeneID:12661
MGI:1098266
definition
GO_component
: GO:0045177 - apical part of cell [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007411 - axon guidance [Evidence IMP]; GO:0007610 - behavior [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0031175 - neurite development [Evidence IDA]; GO:0001764 - neuron migration [Evidence IMP]
codon_start
: 1
note
: close homolog of L1
product
: cell adhesion molecule with homology to L1CAM
protein_id
: NP_031723.2
name
EG666084
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666084
definition
number
: 1
pseudo
: _no_value
name
EG666084
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666084
definition
number
: 2
pseudo
: _no_value
name
LOC666141
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666141
definition
number
: 2
pseudo
: _no_value
name
LOC666141
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666141
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:124159
definition
standard_name
: 35.MMHAP86FLD5.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:125333
definition
standard_name
: MHAa78h12.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:123757
definition
standard_name
: 26.MMHAP83FRA11.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:122867
definition
standard_name
: 06.MMHAP76FRB9.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:208006
definition
standard_name
: BB266622
name
(CDS detail)
type
STS
link
xref
UniSTS:144120
definition
standard_name
: Cntn3
name
(CDS detail)
type
STS
link
xref
UniSTS:211163
definition
standard_name
: RH127853
name
(CDS detail)
type
STS
link
xref
UniSTS:266902
definition
standard_name
: DBX
name
(CDS detail)
type
STS
link
xref
UniSTS:125746
definition
standard_name
: U42386
name
(CDS detail)
type
STS
link
xref
UniSTS:130799
definition
standard_name
: D6Mit250
name
(CDS detail)
type
STS
link
xref
UniSTS:123646
definition
standard_name
: 24.MMHAP4FRH9.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:159550
definition
standard_name
: AI465420
name
EG666123
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149255391
GeneID:666123
MGI:3643727
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG666123
pseudo
: _no_value
transcript_id
: XR_034802.1
clone name
MSMg01-334I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-159G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354N07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-509I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-053H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-502K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-546I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353G03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-090G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-192P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290I17
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-109H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161A21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-207K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-063N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-201K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-201A03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-039L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245E15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-227I01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-114O13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279P15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-129I21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-090M19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-338A04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-167C04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191D05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219E07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100I19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-320H14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-187P02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-177H16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-326D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316C04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-193I14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-131O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-144K10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046F13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-265N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-216E24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-182N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-146N17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093A03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-036J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-285F24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240D13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180C05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-028H05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-277J21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206O08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091P16
singlet/doublet
doublet
plural/unique
unique
clone name
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doublet
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B6Ng01-071B10
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doublet
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unique
clone name
B6Ng01-078N07
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doublet
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unique
clone name
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doublet
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unique
clone name
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doublet
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unique
clone name
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doublet
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clone name
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clone name
B6Ng01-134C15
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doublet
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unique
clone name
B6Ng01-115B01
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clone name
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clone name
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clone name
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B6Ng01-308I07
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doublet
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clone name
B6Ng01-030I08
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doublet
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doublet
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B6Ng01-347C19
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doublet
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B6Ng01-187D14
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B6Ng01-280D11
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B6Ng01-050K01
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B6Ng01-281F04
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B6Ng01-113B07
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B6Ng01-147J17
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