Query= MSMg01no296_j18.b1 MSMg01no296_j18.b1 CHROMAT_FILE:
MSMg01no296_j18.b1 PHD_FILE: MSMg01no296_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:51 2005
(658 letters)
>mm_chr6_108360028_108361084
Length = 1057
Score = 1226 bits (634), Expect = 0.0
Identities = 649/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 5 gaattcattagataatatcaagtttaaaatgcatctaaaataagtaacatgaagtcggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagataatatcaagtttaaaatgcatctaaaataagtaacatgaagtcggtg 264
Query: 65 atactattttattgctttaaaatgctcctgagcttctctcaccatctaggcactgtgttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atactattttattgctttaaaatgctcctgagcttctctcaccatctaggcactgtgttc 324
Query: 125 ttcagctttctgttgatatgatgaaaaaaaaaacagactaatttagttacaaacaaaaaa 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 ttcagctttctgttgatatgatgaaaaaaaaa-cagactaatttagttacaaacaaaaaa 383
Query: 185 agattaatttttttttccccaaagctttgcggtgaggcagcatatcatggcaggagtgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agattaatttttttttccccaaagctttgcggtgaggcagcatatcatggcaggagtgtc 443
Query: 245 tgatggggtagacatgttcaaccaatcataaaaagaaagcaacaatagcaaggaggaggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatggggtagacatgttcaaccaatcataaaaagaaagcaacaatagcaaggaggaggg 503
Query: 305 caatgtcccaccccctgtcctttggatgcccgaaggacctcttcctaggtcccacctcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatgtcccaccccctgtcctttggatgcccgaaggacctcttcctaggtcccacctcct 563
Query: 365 tcctatggcaccagtcttaagaccagttcctttaatacatagctctttaggggatagtca 424
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 tcctatggtaccagtctgaagaccagtccctttaatacatagctctttaggggatagtca 623
Query: 425 acatctacaccaaagcagacacattctggaatccagtctttgacccttctggaatcctcc 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 acatctacaccaaagcagacacattctggaatccagtccttgacccttctggaatcctcc 683
Query: 485 cactaagatgtggagggttccagacagcctctgtttctagccaggccatctgtgttctgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cactaagatgtggagggttccagacagcctctgtttctagccaggccatctgtgttctgc 743
Query: 545 agccttcttcacctcgcctctctctcttatagacccgccagcctgtctttgtgcaactcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agccttcttcacctcgcctctctctcttatagacccgccagcctgtctttgtgcaactcc 803
Query: 605 tgcaaggcgtgttccgagtttaccactgcaactggctgatgccgagccaaaaag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgcaaggcgtgttccgagtttaccactgcaactggctgatgccgagccaaaaag 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_j18.g1 MSMg01no296_j18.g1 CHROMAT_FILE:
MSMg01no296_j18.g1 PHD_FILE: MSMg01no296_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:51 2005
(287 letters)
>mm_chr6_108564152_108564838
Length = 687
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Minus
Query: 1 agatgggttctttgtgctacgctgaacagtttcctttctgaagctgggtaatgaaacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agatgggttctttgtgctacgctgaacagtttcctttctgaagctgggtaatgaaacagg 425
Query: 61 caattggtatttgaaaatgtcagcataggaagatgggcgaggaaaacactgcatttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caattggtatttgaaaatgtcagcataggaagatgggcgaggaaaacactgcatttttat 365
Query: 121 ttcacgaggatttggggaactcataatagaaattttggatattttgtttttaaataagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttcacgaggatttggggaactcataatagaaattttggatattttgtttttaaataagac 305
Query: 181 tgtagcctttactaaaaggttgagcatatgtgcctgggtaaaaccacctggggggagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtagcctttactaaaaggttgagcatatgtgcctgggtaaaaccacctggggggagtgg 245
Query: 241 tgctgccaaacgccatgctccgtggaatttagtgaagttcaacc 284
||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 244 tgctgccaaacgccatgctccttggaaattagtgaagttcaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
