BAC Information

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BAC

Clone NameMSMg01-299G12
Chromosome6 (Build37)
Map Location 66,394,308 - 66,394,547
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299G12.T7 (MSMg01no299_g12.b1)MSMg01-299G12.TJ (MSMg01no299_g12.g1)
ACCAG426188AG426189
length810770
length of high quality
(start - end)
312 (45 - 356)240 (70 - 309)
definitionCHROMAT_FILE: MSMg01no299_g12.b1 PHD_FILE: MSMg01no299_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:19 2005CHROMAT_FILE: MSMg01no299_g12.g1 PHD_FILE: MSMg01no299_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCTATGTGTATACGCAGATAGTTGAGTCCTAGAGGACGTCTTGAGATGG
GTTGTGTTGTAGGGAGAATTATGATATTTTTCAGTTTAGTGGAATATATA
TTTTAAAGGAATTCCTTTATTATATTCTTAGTTTCATGGGTGTTTGATGT
ATCACCTCCCTTTTTGGGTCTAATATTCTCAATTTTTTGTGTCTCTCCTT
TTTTTTCCTCTTTAGCTAAGGGCCTCTCAATCTTGATTATTTTTTTTGAA
AGAACCAACACATCTGTTCATTGATCTCTTGTATTAATTTCATTTTCCAT
AATTTCCACATTGTTGTCCCTCTACATTTTCCTGACTCTCCCCCACCAAC
TCTCTCCTTCTCAAACCCCTGTACTTTTCTAGGACACATTTTGTAAATAC
ATTACACGTGATATTTCTTGAAAAGATAAATCTTTAAATAAAAACAATCC
TAAATTTCTGCTCACCTTTTAAATCTGCGGATTTCCCTTTACCTACCCCC
CCTTGCCCTTTTTTCTCGACTTGATATCCTATTTGGATGATTTCTACTTT
TTTTTTGTTCAAAAATTAAACCCCACCTGGCTGTCTTTTTATCAGGGTTC
TCTATTTCCCGTTTCTCACCTTCTTGTCCTTATACTTCCTTTTCGCCCCC
GACAATCTGTTTATCTCCCTCTCTCTCTACTCTCTCCTTCTCTCTCCTCT
CCTACCCCCCCTCTTTCCCTTCCTTTCTCCCGTGCCCCCAACCTTCACCT
ACTTGATCTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTATGAACTGCGAACTGCGATGAAGTACAGT
AGGATCTGCCCACCTCTTCAAGTGCTGACTCAAAAATGCAAAACGTTTCC
CCTTTCTCCTCTCTGTCTCTTACTTTGTGGGGCTGGCCAGAACCTAAGCG
CACTTTCCCTGCTCCTCTTGGCTTCCTTGCTTTTCTCTGAAGCCCTTGCA
ACACTCTTTGCTTGTTGGGGCCCGGCCTGCGGCTCTCATGTCCGGGTTCG
AGCCTGGGAGGCAACCTGCATCTGAAAGAGAAGAGGGAACCTAGGCGGGT
AGAGAAATAATGTATCCAAGACATGCTAGTCTGCTCAAGGTTCGAATGTT
TAATAAAAAAGTCCGCGCTTATAAAGAGGGAAACCCATCCCCTATCACGC
CAAATTTCTTGATGTTGTCAGCACAGCCTTTTAGCAGTAATTCACCAGAT
TCACAGGTTGTAGTTAACTCCGGACAATCTTGGAGAACCTGCTCGGCCTC
CCCGCACCTGCCCGGCAGCGTAACTTCCAAGGAAACTAGCCGACCCTGAT
ACCTAACCATTGCGGCGTCCCCTGCCCCCAAGTCTTACATCTGAAACCAA
GCTTCCCAACTCTGAATGATCTTATTTCTCGCCAATGCAATTTCCTTGAC
CTTTCAATGGGCTTGACCCTCCATTCCCCACTTCCATAGGTCCTCCTTTT
TCCCCCCTCTGCCCATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_g12.g1 MSMg01no299_g12.g1 CHROMAT_FILE:
MSMg01no299_g12.g1 PHD_FILE: MSMg01no299_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:20 2005
         (240 letters)



>mm_chr6_66394108_66394747
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgaactgcgaactgcgatgaagtacagtaggatctgcccacctcttcaagtgctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgaactgcgaactgcgatgaagtacagtaggatctgcccacctcttcaagtgctgac 260

                                                                       
Query: 61  tcaaaaatgcaaaacgtttcccctttctcctctctgtctcttactttgtggggctggcca 120
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaaatgcataacgtttcccttttctcctctctgtctcttactttgtggggctggcca 320

                                                                       
Query: 121 gaacctaagcgcactttccctgctcctcttggcttccttgcttttctctgaagcccttgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gaacctaagcgcactttccctgctcctcttggcttccttgcttttctctgaagcccttac 380

                                                                       
Query: 181 aacactctttgcttgttggggcccggcctgcggctctcatgtccgggttcgagcctggga 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacattctttgcttgttggggcccggcctgcggctctcatgtccgggttcgagcctggga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)