BAC Information

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BAC

Clone NameMSMg01-299G18
Chromosome6 (Build37)
Map Location 34,693,771 - 34,855,846
singlet/doubletdoublet
Overlap geneCald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneStra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299G18.T7 (MSMg01no299_g18.b1)MSMg01-299G18.TJ (MSMg01no299_g18.g1)
ACCAG426199AG426200
length731757
length of high quality
(start - end)
508 (78 - 585)354 (75 - 428)
definitionCHROMAT_FILE: MSMg01no299_g18.b1 PHD_FILE: MSMg01no299_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:21 2005CHROMAT_FILE: MSMg01no299_g18.g1 PHD_FILE: MSMg01no299_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,855,445 - 34,855,846)(34,693,771 - 34,694,124)
sequence
NNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCAGGAAGATACCGCTGAAGTGGTCAAAGGAAGTAAATC
AAACGGTTAAGCAGAAAATAAACCCACAGTGGTTTTGGGTGTCCAAAAGT
GTTTTGCCTTTTTAACTCATTATTAGCTGTCGCTCTTTCATTTGCCCACC
CTTTGATGAGCAGAAATGGTTTGGATGTGGCGTGTTTAGGAAGCTCCCTC
AACAGAGGGAAGGTCCTGTGATGTCACTGGCTCACTGGGCTTTGCCCCTC
CGTAGCTTTTTGCACTGCAAGCTGAAATCCATCGACTAAAGAAGGAAGAG
CAGCAGCAGGAAGAAGAAGCAGCAGCTTTGGTCCAGCATAAGCTGCCGCC
TTATGTTTCCAGTATGGACCGCCTCGCGGACTCGGAGCTGTGAGTAGGCT
TGGGGTTCGAGAGGGGTGGGGGCTGCCATCTGTCCTCTGATCTCCCTGTG
GTCTGAGTATCACACTGACTTCCTCATTGGCAGTGGCCTATGTCTGCCGA
GGGAGAATTGCCACAGAGGGATTGAGCATACCTGGCTCCAAATTGTATGT
GTGAGGTCCCCATTTTTTAGGGTTCTCTCCTGGATGGGGAACTGTATGGC
TAGCTGTGTCAGGTGTCATGATGGTGGAGTCCAGGGAAGCTGCTTCATAT
GCGAGAAGGACTGGCTCCCACAGGTGTACAT
AACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTCTGGTGAGTGCTTTGGAATTTG
CAGTACCTTTTTAAAGTGCTAGAACTCAGTTGGTCCAAGCGTCCTGTGCA
CAGACCTTTGCCATTGACCTCCCAGTTCCCCATATTCCTGTGGCCATGTA
ATCCGCATGCGGCTAATTCACAGCGACAATGTCCTGCAGCAACAGCAGAG
GCCCAAAAGGCTTAAAATCTAGGCTTTCTTCTATGATATTTTGTTGTTAA
CTATATGATGTGTTTTTCCAAATCCTAGTGAACTTGAACATCAGAGGAGC
CAAGTTTGGTATTATTTATGAAATTTGATGGAGTTTCTAAACATTTTAAG
ACATAGGCTTCCAGCTCCAGTCGCCGTTCTGATATCACATGACTGGTAAT
TCCAGCCAGGAGGGGCCGACGCCCTTGGTCTGGGCAGTGTCCAGCACCCT
GGAAGAGTGATTAAGATGATGGACATGCTACAGTTTGGATTTTCCCTTTT
TTTTTCTTTTAAAAATAAACATTGGGTTTAGCCAGCCTTTACCCATTGGA
GAAAAGTAGAAAAAGCTCTTTATTCTTGGAAGTCTGTACCAAGGAGTTAT
ATTGTCTAGATTAGTTATGGTAATGTTGTTGCTATGAAAATTTTCATAAT
TTTAACCCGGTATGCCAATGCACCGTGGAAAATTTTTGTGGACTGGACAA
AATGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_g18.b1 MSMg01no299_g18.b1 CHROMAT_FILE:
MSMg01no299_g18.b1 PHD_FILE: MSMg01no299_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:21 2005
         (508 letters)



>mm_chr6_34855245_34856152
          Length = 908

 Score =  723 bits (374), Expect = 0.0
 Identities = 395/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagtggtcaaaggaagtaaatcaaacggttaagcagaaaataaacccacagtggttttg 60
           |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 602 gaagtggtcaaaggaagtaaatcaaacgattaagaagaaaataaacccacagtgattttg 543

                                                                       
Query: 61  ggtgtccaaaagtgttttgcctttttaactcattattagctgtcgctctttcatttgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggtgtccaaaagtgttttgcctttttaactcattattagctgtcgctctttcatttgccc 483

                                                                       
Query: 121 accctttgatgagcagaaatggtttggatgtggcgtgtttaggaagctccctcaacagag 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 482 accctttgatgagcagaaatggtttggatgtggcgtgtctaggaagctccctcaacagag 423

                                                                       
Query: 181 ggaaggtcctgtgatgtcactggctcactgggctttgcccctccgtagctttttgcactg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 422 ggaaggtcctgtgatgtcactggctcactgggctttgcccctccatagctttttgcactg 363

                                                                       
Query: 241 caagctgaaatccatcgactaaagaaggaagagcagcagcaggaagaagaagcagcagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caagctgaaatccatcgactaaagaaggaagagcagcagcaggaagaagaagcagcagct 303

                                                                       
Query: 301 ttggtccagcataagctgccgccttatgtttccagtatggaccgcctcgcggactcggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 302 ttggtccagcataagctgccgccttatgtttccagtatggaccgccttggggactcggag 243

                                                     
Query: 361 ctgtgagtaggcttggggttcgagaggggtgggggctgccat 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctgtgagtaggcttggggttcgagaggggtgggggctgccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_g18.g1 MSMg01no299_g18.g1 CHROMAT_FILE:
MSMg01no299_g18.g1 PHD_FILE: MSMg01no299_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:21 2005
         (354 letters)



>mm_chr6_34693571_34694324
          Length = 754

 Score =  638 bits (330), Expect = 0.0
 Identities = 348/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtctggtgagtgctttggaatttgcagtacctttttaaagtgctagaactcagttggt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtctggtgagcgctttggaatttgcagtacctttttaaagtgctagaactcagttggt 260

                                                                       
Query: 61  ccaagcgtcctgtgcacagacctttgccattgacctcccagttccccatattcctgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagcgtcctgtgcacagacctttgccattgacctcccagttccccatattcctgtggc 320

                                                                       
Query: 121 catgtaatccgcatgcggctaattcacagcgacaatgtcctgcagcaacagcagaggccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtaatccgcatgcggctaattcacagcgacaatgtcctgcagcaacagcagaggccc 380

                                                                       
Query: 181 aaaaggcttaaaatctaggctttcttctatgatattttgttgttaactatatgatgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggcttaaaatctaggctttcttctatgatattttgttgttaactatatgatgtgtt 440

                                                                       
Query: 241 tttccaaatcctagtgaacttgaacatcagaggagccaagtttggtattatttatgaaat 300
           ||||||||||| |||||||||||||||||||||||||||||||||||| |   |||||||
Sbjct: 441 tttccaaatccaagtgaacttgaacatcagaggagccaagtttggtatgaaccatgaaat 500

                                                                 
Query: 301 ttgatggagtttctaaacattttaagacataggcttccagctccagtcgccgtt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgatggagtttctaaacattttaagacataggcttccagctccagtcgccgtt 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)