BAC Information

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BAC

Clone NameMSMg01-300B04
Chromosome6 (Build37)
Map Location 19,819,298 - 19,819,592
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300B04.T7 (MSMg01no300_b04.b1)MSMg01-300B04.TJ (MSMg01no300_b04.g1)
ACCAG426661AG426662
length740714
length of high quality
(start - end)		698 (43 - 740)296 (74 - 369)
definitionCHROMAT_FILE: MSMg01no300_b04.b1 PHD_FILE: MSMg01no300_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:10 2005CHROMAT_FILE: MSMg01no300_b04.g1 PHD_FILE: MSMg01no300_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTATCAAGAATCTTGAAGGGCCAAGAAGTAATTAAAGAAATGTTCAAC
ATTCTCAATGATCAGGAAAATGCAAATCAAAATGACCCTGATATTCCACC
TTATACTAATTAGAATGGCTAAGGTCAAGAACTCTGGTGACAGCATATAA
CAGAGAGGATGTAGAAAAAAAAATAAACATTCCTACATTGCCGTTAGGTT
TTGAAACTTGTGAAACTACTCAAGAAATCAATCTGACAGTTTCTCAGAAA
ATTGGAAAAAGTTCTACCTGAAGTCTCAGGTATAAACACTCGTAGGAATA
TACCCAAAAGATATTTCACCATACCCCAAGGAAACAAATGCCAATATATG
CATAACAGCTTTATTCATAATAGCCAGAAACTAAAGCAACCCAGCTGTCC
CTCAACCAAAGAATGGATATAGAGAATTTGGTATATTTACACTATTCATC
TATTAAAAACTAAGACATCATGAATTTTGCAGGCAAATGGATGGAACTGA
AAAGTATCATTCTGAATGAGGTAACCCAGTCTCAAAACAATATGCATGCC
ATGTACTCATTAAAAAGTGGATATTAACCAAAAAGTTCAGAATACTCATG
ATACACTCAGAGACCCAGGGATGTTAAGCAAGTCAGAAGGCCCAAGTGAA
AATGCATAAAGAGTCTGTGCTTATAAAGAGGGGAGGTCCA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACGTTCACATTCTTTCTGTACTACCAG
GTAAAGGATAGTTAGTCCTACAATATAATTTAGAATATCTGCATCTTAAC
TCTGATGTGAATTGCTTTTCTATATCATCATGCATAACAAATATATTGGT
TCATCTTTGGTATTCAAAGAGGTCATCTCAAAATATTCTGTAATATTTTC
AGGTGTCAGTGTATTCACTAAGCATTGTCCCAAAGTTTTTGTTGCCATTT
ATTTCAATGATTACTGAGGCAAAGCCAATAGTTTCATTTGTAATACAGAA
CTATGGTCCTATTTTTCATCCCTAAGGCAACAAAGACAATTGGTTTCTTG
TGATTTTTTTACTCTGGACTTGAATAAAATTATATATTTTTAGTGCTTTT
CAACGGATCGTCTCCTATTATAACCAATGTTCATATCATTCATTTGTCTG
ACATCCATGGATCCGCAGATACTTTCCCAGTCCTTATTATGTGTTGGTGC
AATTTTCCAAATCCCTCTTTTAGTATACCCATCCTTAAAAATGGCTCCTA
AACCCCTAATTGGAAATTTTAAAGGGGAAAAATTTTTGGAAAAGTAACTC
CCGATTAACCTTAAAAGAATTCCCTGCTTTTGAAAAAAAAAGATTTTCTT
CCGCCTTTTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_b04.g1 MSMg01no300_b04.g1 CHROMAT_FILE:
MSMg01no300_b04.g1 PHD_FILE: MSMg01no300_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:10 2005
         (296 letters)



>mm_chr6_19819098_19819793
          Length = 696

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgttcacattctttctgtactaccaggtaaaggatagttagtcctacaatataatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acgttcacattctttctgtactaccaggtaaaggatagttagtcctacaatataatttag 436

                                                                       
Query: 61  aatatctgcatcttaactctgatgtgaattgcttttctatatcatcatgcataacaaata 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aatatctgcatcttaattctgatgtgaattgcttttctatatcatcatgcataacaaata 376

                                                                       
Query: 121 tattggttcatctttggtattcaaagaggtcatctcaaaatattctgtaatattttcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tattggttcatctttggtattcaaagaggtcatctcaaaatattctgtaatattttcagg 316

                                                                       
Query: 181 tgtcagtgtattcactaagcattgtcccaaagtttttgttgccatttatttcaatgatta 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtcagtgtattcactaagcgttgtcccaaagtttttgttgccatttatttcaatgatta 256

                                                                  
Query: 241 ctgaggcaaagccaatagtttcatttgtaatacagaactatggtcctatttttca 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgaggcaaagccaatagtttcatttgtaatacagaactatggtcctatttttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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