Query= MSMg01no300_n16.b1 MSMg01no300_n16.b1 CHROMAT_FILE:
MSMg01no300_n16.b1 PHD_FILE: MSMg01no300_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:06 2005
(430 letters)
>mm_chr6_97379019_97379847
Length = 829
Score = 731 bits (378), Expect = 0.0
Identities = 416/432 (96%), Gaps = 7/432 (1%)
Strand = Plus / Minus
Query: 1 acttatccagaagtatgcatcagtaacagacattgactaatctatctgaattcatgctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 628 acttatccagaagtatgcatcagtaacagacattgactaatctatctgaattcatgcccc 569
Query: 61 aggtgaatccctgagagcaatttccctgtgctcagcagaaccttctttcgtactttggta 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 568 aggtgaatccctgagagcaatttccttgtgctcagcagaaccttctttcgtactttggta 509
Query: 121 cccattgtggtaccacgaaactttactggctcaaggtttgctcactcttctgacaggact 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cccattctggtaccacgaaactttactggctcaaggtttgctcactcttctgacaggact 449
Query: 181 ccccacacacagttcatccacttgggtgaaccagaaaccacgacccatatccaacaatgt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccc----cacagttcatccacttgggtgaaccagaaaccacgacccatatccaacaatgg 393
Query: 241 atctattccgccctatgctgtcacattctgccatcgaggaaatcaaaccccatgttccca 300
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 392 atctattctgccctatgctgtcacattctgccatggaggaaatcaaaccccatgtcccca 333
Query: 301 attctt---cttgtcagagaagctctcccttgaagtgtgtatttgatggcctctcttagt 357
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 attcttctccttgtcagagaagctctcccttgaaatgtgtatttgatggcctctcttagt 273
Query: 358 ttctgttgtcagctatagtctattcataagtgttgttttgacgaacacagtacacctctc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttctgttgtcagctatagtctattcataagtgttgttttgacgaacacagtacacctctc 213
Query: 418 gcttttcagcct 429
|||||||||||
Sbjct: 212 acttttcagcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space: 345220
Effective search space used: 345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_n16.g1 MSMg01no300_n16.g1 CHROMAT_FILE:
MSMg01no300_n16.g1 PHD_FILE: MSMg01no300_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:06 2005
(195 letters)
>mm_chr6_97211747_97212341
Length = 595
Score = 331 bits (171), Expect = 2e-95
Identities = 189/195 (96%)
Strand = Plus / Plus
Query: 1 catacctctgtgagtttgaggccagcctggtctacagaaggaattccaggataaccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacctctgtgagtttgaggccagcctggtctacagaaggaattccaggataaccaggc 260
Query: 61 ttacacagtgaaacaaaatcaaaaccaaacaaactcacaaaacccaaaactaatcagggg 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 261 ttacacagtgaaacaaaatcaaaaccaaacaaacacacaaaacccaaaactaatcaggag 320
Query: 121 gaaggaagcaggttggcaagcacagctctgctgcttactaagggtatctggctaacactg 180
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct: 321 gaaggaagcaggttggcaagcacagctctgctacttactaagggcagctggctaacactg 380
Query: 181 tctacctgtgtgtac 195
|||||||||| ||||
Sbjct: 381 tctacctgtgcgtac 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space: 109769
Effective search space used: 109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
