BAC Information

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BAC

Clone NameMSMg01-301A01
Chromosome6 (Build37)
Map Location 108,870,592 - 108,870,829
singlet/doubletsinglet
Overlap genenone
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301A01.T7 (MSMg01no301_a01.b1)MSMg01-301A01.TJ (MSMg01no301_a01.g1)
ACCAG427325AG427326
length721725
length of high quality
(start - end)
241 (127 - 367)432 (72 - 503)
definitionCHROMAT_FILE: MSMg01no301_a01.b1 PHD_FILE: MSMg01no301_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:17 2005CHROMAT_FILE: MSMg01no301_a01.g1 PHD_FILE: MSMg01no301_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACACTATGTTACTCATAGATTTCTGCCCATTAAAGGGAGCATCACA
ACAATGAGAAAGCTCAGTTAGCCCCTGTATGTTGCTAAGAAAAGAGTATG
TAAAGAGTTCCTACAGAGCTGAGGAAGTAGGTCGACAGCAGAACACTTAC
CTAGCAAGTACCAGGCCCTGAGTTCAATCCCTAGCACTAAAAGTAGAAAA
TTAAGACACTCTAGTTTGAAGGAGAAGTAGAAAGAGGAGGATGAGATAGT
CTGAATAACTTATAACAAAAGATGTGAAAATAGCTAATAGGCACATTAGA
AAGTACTCAGCATCTTTGTTTCATCACACAGGTGCAAACTACAAACTGCA
GTGCCATATCACCATATGCACAACTGAGCAGCTGAATTTTAAAATGACAG
CACCAAATATTATACACATCCTTTTTTAAAGGTATTGGATGATAACCTAT
AATGTTAAACGTTGTTACCCTACCACCTATAAATTTCATTCCTAGATACA
TATCTACCAAAGGAGTTATACAGGAACGCTCATAGGAACTTATTCTTAAA
TTCCACACCAGGGGCAAGAAAGTTTGAGCTCATCGTCAGGATACATTCCT
CAGTAAGCAAACTGTACCATAGCCACCATTTACACCAGAAGCCCCATATT
GACATTAATATTATAACTGAA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGGCTCATCTGGGTTTCCCGTGGACTC
AGGGCACAACAGGAGGAGTTCTACATTTTGATCTCCAGCCGGCAGAAGAC
TGTGTTCCACATTGGGTATAGCTTGACCATAGGAGAGCTCAAATCCCACC
TTCTACAGTGACACTCCTCCAACAAGGCCACACCTTCCAATAGTGCTGCT
TCCTCTGAGCCAAACATTCAAATACACAAGTCTATGGGGGTAGTACCTAG
TCAAACCACCACATTCTGGAAGAAGAGCAAGAGATCTTAACCTGTCAGCA
CCAATGATGGTTAATCTTGATTGTCATTTGATTAGATTTATAACCAATAT
GAGGTAGTACTCTAACCGGGCCTGAAAGTGCATTTCCAGAAAAGATGAAC
TGAGTAAAAAGACACTCCCCAGGGTGGACAATACCTTCAGGTGGCATCCC
AGATGAAGCACATGAAGGCGAAAACTTTGCTGTTTGCTCGCCTCTCTTCT
CTTCTTGCTGCTGCAGGCATCTCTACTGTTGCGGTTGCCACCGATAGCAT
CCTCAGATTCTCTACTTCTAAGATCTTTGGATCCTCCTGTAATCCTCTGG
CCTTTCCGCGACCGATTGTTAATTACCGACCCATCCCTCCCCCTTTGTAC
CTGACTGCTCTACTGTCCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_a01.b1 MSMg01no301_a01.b1 CHROMAT_FILE:
MSMg01no301_a01.b1 PHD_FILE: MSMg01no301_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:17 2005
         (241 letters)



>mm_chr6_108870281_108870921
          Length = 641

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatgttgctaagaaaagagtatgtaaagagttcctacagagctgaggaagtaggtcgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtatgttgctaagaaaagagtatgtaaagagttcctacagagctgaggaagtaggtcgac 490

                                                                       
Query: 61  agcagaacacttacctagcaagtaccaggccctgagttcaatccctagcactaaaagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agcagaacacttacctagcaagtaccaggccctgagttcaatccctagcactaaaagtag 430

                                                                       
Query: 121 aaaattaagacactctagtttgaaggagaagtagaaagaggaggatgagatagtctgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaaattaagacactctagtttgaaggagaagtagaaagaggaggatgagatagtctgaat 370

                                                                     
Query: 181 aacttataacaaaagatgtgaaaatagctaataggcacattagaaagtactcagcatc 238
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 369 aacttataacaaaagatgtgaaaatagttaataggcacattagaaagtactcagcatc 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)