Query= MSMg01no301_d09.b1 MSMg01no301_d09.b1 CHROMAT_FILE:
MSMg01no301_d09.b1 PHD_FILE: MSMg01no301_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:33 2005
(322 letters)
>mm_chr6_8205091_8205812
Length = 722
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%)
Strand = Plus / Minus
Query: 4 ggaattctcatctaacatttttagggcctgaatattggaatgtcttcccacgggtcaaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 520 ggaattctcatctaacatttttagggcctgaatattggaatgtcttcccacaggtcaaac 461
Query: 64 taatttgagagattctggagactttagatatgaaagaagtatgtcactggagggttgcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taatttgagagattctggagactttagatatgaaagaagtatgtcactggagggttgcct 401
Query: 124 ttcagggttctagctggtctctgatcccttcctcactttgctgcttcttcaccccagtgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcagggttctagctggtctctgatcccttcctcactttgctgcttcttcaccccagtgt 341
Query: 184 tatgaatctctcttttctcccatcccctgtcatctctaaggtactaagccctctgaaagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tatgaatctctcttttctcccatcccctgtcatctctaaggtactaagccctctgaaagc 281
Query: 244 atgaatcagctctccttttaagttgtgaatatcaagtgttttgtcacaatgataaaatag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgaatcagctctccttttaagttgtgaatatcaagtgttttgtcacaatgataaaatag 221
Query: 304 ttatttatacacacaca 320
|||||||||||||||||
Sbjct: 220 ttatttatacacacaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_d09.g1 MSMg01no301_d09.g1 CHROMAT_FILE:
MSMg01no301_d09.g1 PHD_FILE: MSMg01no301_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:33 2005
(525 letters)
>mm_chr6_8046076_8046997
Length = 922
Score = 934 bits (483), Expect = 0.0
Identities = 511/521 (98%), Gaps = 3/521 (0%)
Strand = Plus / Plus
Query: 1 ttagaaataaacttgacattacaggtcaacaatgagatttggaattccctcactttcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaataaacttgacattacaggtcaacaatgagatttggaattccctcactttcaca 260
Query: 61 tcttttgcttccctcatcactcgaggtcaaggaagtactatgaagtctccaggccacatc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tcttttgcttccctcatcactcgaggtcaaggaagtactacgaagtctccaggccacatc 320
Query: 121 actattcaaaccatagtcataaattctaatccaatgtgcttgccactttgtaactagggc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actattcaaaccgtagtcataaattctaatccaatgtgcttgccactttgtaactagggc 380
Query: 181 aataaatctgtatttgctgggggctttcattaaatgagagtgcatggctaaaggcagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaatctgtatttgctgggggctttcattaaatgagagtgcatggctaaaggcagaga 440
Query: 241 gtgaacaatagcagagagcgctggtgtcctggctccaaaccattaacatttgacagtttt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaacaatagcagagagcgcttgtgtcctggctccaaaccattaacatttgacagtttt 500
Query: 301 ccggcttccccaagtattcaaaggttttagaagcagttctagctctgagcacacagacat 360
| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ctgccttccccaagtattcaagggttttagaagcagttctagctctgagcaca--gacat 558
Query: 361 ccttttcttcttctgaccataagaggacccatgtcctttacaaataaatcccactgtggg 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cctttccttcttctgaccataagaggacccatgtcctttacaaataaatcccactgtggg 618
Query: 421 cttctatttgggatggatgtctttgaattaagtcatcacttccgattctggtacttaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cttctatttgggatggatgtctttgaattaagtcatcacttccgattctggtacttaagt 678
Query: 481 aataatattatagttaggtaggtgaatggnttggggggggg 521
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 679 aataatattatagttaggtaggtgaatgg-ttggggggggg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 922
Length adjustment: 10
Effective length of query: 515
Effective length of database: 912
Effective search space: 469680
Effective search space used: 469680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
