BAC Information

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BAC

Clone NameMSMg01-301E22
Chromosome6 (Build37)
Map Location 33,969,853 - 33,970,119
singlet/doubletsinglet
Overlap genenone
Upstream geneChchd3, Gm1401, Exoc4
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301E22.T7 (MSMg01no301_e22.b1)MSMg01-301E22.TJ (MSMg01no301_e22.g1)
ACCAG427546AG427547
length769702
length of high quality
(start - end)
271 (45 - 315)---
definitionCHROMAT_FILE: MSMg01no301_e22.b1 PHD_FILE: MSMg01no301_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:41 2005CHROMAT_FILE: MSMg01no301_e22.g1 PHD_FILE: MSMg01no301_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGAGATGTGCCGGGGGGGGGGCTCCTGATTTGCTCCCATCAAAGC
AAATGCGTAAATGCCACTGAACCGCACACTTACAGATGCCCAAATGATAA
ACCCCACAGTTTTAAAAAAGCATGCTGTGAAGAGCTACTCAGTATAGAAG
GTGGCAAAATCCAATTTCTCTCCAAAAATTATTCTTATTCAGAATTTTGA
AGAGGCCGTAAATTACTTCCTGGATAAGTTCAGTCACGGGGGACTCTTGA
GTATCTTTATTTGGTCAGGAACTTTTTTAAAAAAAAATCAAACCATGCCA
AGAAAAGCTGCTGGAGGCAGTGCCAATAATTAATGAACTTTGAAAAATAC
CCTAAGCCTCTAGTGCCCCCCACCGAAAATATTATGTATACGCAAAGCTT
TTTGTGTCTGCAAACCTCTTTATAAATCAGATAATTATTTTACACACAAT
TTTTCCCACTTGGTTATCTAAGGCCAGCGTAAGGCCAAGGTCATGCCCTC
TTACCCATTCTGATGGTCGCTGTTCTCTGTTCCTAAAAAATCATTCCTTC
CTCTCACAGTTCTATTTTCTCTTATACCCTTTTTCTTTTCCCTTTTTACT
ATGCTCCTTCACATATTCCCCTTTATCCCTATTTTCAAACTCTGTACCTG
TTACTCTCTTTTATCTTTCTCCTCCCCTCTTGTCTTTATTATTCACTTTT
CCTCCTTTTCTCTTCTTTN
TATCTGTGAGGCTGGCGGGGGCTGGTTCCCACCAGNNGANNNAGAGAGGA
TACANNAGNAGAGGNNGGGGGGANGANNGANAAGGAGAGAAAGGTGTTTC
CCCAACAAAGAGAGGGGNGNGNAGGANAGGGGGGGAAAGGNAGAAAGNNA
GGAGGGNNANAAAGNANNANANNANNNAGAGNANANAAAAANAGAAGGGA
AANANGGAGAGAAANAGATTTTTTNAAGATANNNANAGNAAGGNAAANAA
GTTGGAAAANNAAGAGGGGGGGGGGAGGTTTTGACTACTTTGAAAAGANA
ANAGAGNAAGGGGAGAATTTTTTTTTTTTCCCCCCCCCCCCCCCCNNANN
NAGAGANAGAGNGGAGGGGGGNNNNNNNNAAAAAAAAAAAAAAAAAAAAG
GNNNNGGGGNNNGGGGNNNNNNGNNNGNNNNGNNNNNGNNNNNNNNNNNN
NNNNNNNNNNNGNNNNNNNNNNNNNNNNNNGNNNNNGNNNNNNNGNNGNN
NGNNNNNNNNNGGGNNNNGGGGNNNNGNNNNNNNNGNNGGGGGNNNNNNN
NNNNNNNNGGGGGGGGNNNNNGGGGGGNNNNNNNNNNNNNNNNNGGNGGG
NGNNGGNNGGGGGGTTTTTTTTTTTTTTTTTGNNGGGNNNNNNTTNNTNN
TTNNNTTNTTGTTTNTNTGTTTTTGTGTTGTGGGGGGGGGTGGGGGTTTG
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_e22.b1 MSMg01no301_e22.b1 CHROMAT_FILE:
MSMg01no301_e22.b1 PHD_FILE: MSMg01no301_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:41 2005
         (271 letters)



>mm_chr6_33969649_33970319
          Length = 671

 Score =  433 bits (224), Expect = e-126
 Identities = 257/268 (95%), Gaps = 2/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagagatgtgccggggggggggctcctgatttgctcc-catcaaagcaaatgcg 63
           |||||||||||||| |  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 205 gaattcaagagatg-gggggggggggggctcctgatttgctccacatcagagcaaatgcg 263

                                                                       
Query: 64  taaatgccactgaaccgcacacttacagatgcccaaatgataaaccccacagttttaaaa 123
           || |||||||||||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 tagatgccactgaagtgcacacttacagatgcccaaatgatagaccccacagttttaaaa 323

                                                                       
Query: 124 aagcatgctgtgaagagctactcagtatagaaggtggcaaaatccaatttctctccaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcatgctgtgaagagctactcagtatagaaggtggcaaaatccaatttctctccaaaa 383

                                                                       
Query: 184 attattcttattcagaattttgaagaggccgtaaattacttcctggataagttcagtcac 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attattcttattcaaaattttgaagaggccgtaaattacttcctggataagttcagtcac 443

                                       
Query: 244 gggggactcttgagtatctttatttggt 271
           || |||||||||||||||||||||||||
Sbjct: 444 ggtggactcttgagtatctttatttggt 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)