BAC Information

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BAC

Clone NameMSMg01-301G01
Chromosome6 (Build37)
Map Location 87,240,222 - 87,432,700
singlet/doubletdoublet
Overlap geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Upstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G01.T7 (MSMg01no301_g01.b1)MSMg01-301G01.TJ (MSMg01no301_g01.g1)
ACCAG427598AG427599
length761848
length of high quality
(start - end)
196 (122 - 317)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no301_g01.b1 PHD_FILE: MSMg01no301_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:46 2005CHROMAT_FILE: MSMg01no301_g01.g1 PHD_FILE: MSMg01no301_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,240,222 - 87,240,417)(87,432,514 - 87,432,700)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAATGAAAAACACGAATCCTGCATGAAAAGTGATGTGGCAGGAGGCCTG
GGTGGGGCTGAGTTATGCCCATGATCAGGCTGTCAGAACATTTTATAAAG
TGGCTTGATGAAAGGTCCCGACACAGGTGCCCACTGTTGCTACTCTCGGG
CTGCTACTCAACGCTGTGTCAATCAACCTTTGGGAAAGGTGCATACTATT
ATCTGACGCTTTCATTATAGCCCAGCTGCCCATGGTGTCCTCAAAACGTT
TAAGCCTCCCTGGATTGTGTCCTGACTCCCTCATACACTGTGCTGTTTTA
CCTCCAATTATATCTCATAACCCCACTCACACCCATCCCAGTAGCACTAT
GTGCTACACCTCCACCCGCACTTGCATAATTCACTGAGAATACCTGCCTC
TCTGTCTTCATTCTCACTCCTTCTGCATGAGGCTGTTATTACCTTACCCT
GATGACCTTACCCTATCACTCTTGTTCCCGCTTTTGCCCCCTCTTCTACC
TTCTCTTTTATCCCTGATTGGTACTCCTTTCCTTCCAGCGTTCTTTTTCC
ATTACCTACTTATCGCCTCTGCTCCCCTTTTCTTGTTTCTCTCTCCACCT
TTCTTTCCTTGCCCTCCCTTGTCCCCTCGTCTTTTCTACTTTTCTTCCCT
CCCTTTTTCCTCTCCCTGCCTTCTCATTTTTTTTCTACCCTGTTCTTTAC
TTCCTCTCTTT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACAGAAGAAATTTGCAAGAAACCCA
GATGTCCCTCCCTCCAGATTGTAATAATACAGACAGTGGCCGTGAGGATA
GAGTGGATTAAAGTGTTTCAGGGTGGGGTGGTCTATTTGGAGGGAGAGCG
TATTTAGGGATAACTCCAATGAGATGCTCTCAGTCTTGCAAATTGGTCCA
GTTGGGTTGGGTACCTGATGTCAGAGGCTTCGTGGTCTCATGGCACTTGG
TTCTTCGTTGACTGTCTAATTGTTTGATTTTGCAAGGACTGCTATGGCCC
GATGTGGTATTATTTCATAACCCTCTAGGTTTCTAGGTTTTGATCAATCA
TCTACCTCTACTCTGTGTGGTTTCCCCCCACTTGCACTGCTTGTTCCTTT
TTTTTCCCTTTCTTTTCATCTTTACATTTACTTTTCTTCACCCTCTTTTT
TTTCTTCCTCCCCCTCCCTTTTTCCCCCCTCCTTTTATTTCTTCTCCCCT
CTTCTTGTGTGCTTTTCCCCCTCCTTTTTCCCCCCTCTCTCCTTCTTCTC
TTTTTTTCTTTTTCCGCACTCTCCCTTCTCTTTTTTTTATTTGCTTCTTC
TTATTCTCTTCCTCCCTTATTCTTTCCTCTACCCCCCTTTTTTCTCCATC
TATCTTCCTCTCCCCCTCCTCTTCGCTCTATTTTCTCCTTCTTTCTCCTC
CTTTTCTTCCCTCTCTCCTTTTTTTTTTATTTCCCTCCTCCTCTTATCGC
TCCACCTCTTGTTTCTTTTCAACTTACCTCCTGCTCACCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g01.b1 MSMg01no301_g01.b1 CHROMAT_FILE:
MSMg01no301_g01.b1 PHD_FILE: MSMg01no301_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:46 2005
         (196 letters)



>mm_chr6_87240022_87240617
          Length = 596

 Score =  340 bits (176), Expect = 2e-98
 Identities = 191/196 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatcaggctgtcagaacattttataaagtggcttgatgaaaggtcccgacacaggtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatcaggctgtcagaacattttataaagtggcttgatgaaaggtcccgacacaggtgcc 260

                                                                       
Query: 61  cactgttgctactctcgggctgctactcaacgctgtgtcaatcaacctttgggaaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgttgctactctcgggctgctactcaacgctgtgtcaatcaacctttgggaaaggtg 320

                                                                       
Query: 121 catactattatctgacgctttcattatagcccagctgcccatggtgtcctcaaaacgttt 180
           || ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 321 cagactattatctgacgctttcatcagagcccagctgcccaaggtgtcctcaaaacgttt 380

                           
Query: 181 aagcctccctggattg 196
           |||||||| |||||||
Sbjct: 381 aagcctccatggattg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no301_g01.g1 MSMg01no301_g01.g1 CHROMAT_FILE:
MSMg01no301_g01.g1 PHD_FILE: MSMg01no301_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:46 2005
         (242 letters)



>mm_chr6_87432259_87432900
          Length = 642

 Score =  339 bits (175), Expect = 1e-97
 Identities = 184/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 56  cagacagtggccgtgaggatagagtggattaaagtgtttcagggtggggtggtctatttg 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagacagtggccgtgaggatagagtggattaaagtgtttcagggtggggtggtctatttg 383

                                                                       
Query: 116 gagggagagcgtatttagggataactccaatgagatgctctcagtcttgcaaattggtcc 175
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 382 gagggagagcgtgtttagggataactccaatgagacgctctcagtcttgcaaattggtcc 323

                                                                       
Query: 176 agttgggttgggtacctgatgtcagaggcttcgtggtctcatggcacttggttcttcgtt 235
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 322 agttgggttgggtacctgatgtcagaggctttgtggtctcatggcacttggttcttcgtt 263

                  
Query: 236 gactgtc 242
           |||||||
Sbjct: 262 gactgtc 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)