BAC Information

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BAC

Clone NameMSMg01-301J06
Chromosome6 (Build37)
Map Location 138,729,892 - 138,886,329
singlet/doubletdoublet
Overlap geneEG668196
Upstream geneDera, 9830102E05Rik, Mgst1, Lmo3, Igbp1b
Downstream geneEG632971, LOC100043898, Pik3c2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301J06.T7 (MSMg01no301_j06.b1)MSMg01-301J06.TJ (MSMg01no301_j06.g1)
ACCAG427734AG427735
length741727
length of high quality
(start - end)
657 (41 - 697)515 (71 - 585)
definitionCHROMAT_FILE: MSMg01no301_j06.b1 PHD_FILE: MSMg01no301_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:00 2005CHROMAT_FILE: MSMg01no301_j06.g1 PHD_FILE: MSMg01no301_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,885,688 - 138,886,329)(138,729,892 - 138,730,407)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTTCAACATATCAGCTGATGCTCGCATTTGTGTGTCTGAACAGACTCTG
CTTATAGCTATACTAGGATTGATTTATTTGCTCACTAGTTAATGACCTGG
TTGCTTAGAATTTGAAGTGACAATGGATAGCCCTGCTACAATTATTCCAA
ATTAGGTCACTGTATGACATGTATGTATGCATAAGAATATACAATATACA
CGTGTACCTATATGTGTGTTTTAAGTATCTCAGAAATACCCATGGGGTTG
TCTTTTGATGCAGTCAGTATGCATATTTGGTTTTCTAATTTTTCACCAGG
CTTCTTGCCAAATGGTCCATATTGGTCTGGTAAGATTACGACAAAAATAG
TGTGTCTTGGGTGTCTTTAGCAATAGAAGATGCATGCTAGGTTACCCTGG
AGGTTCTATGCCTGGTATGAGGGTGGATAGTCCTAACACCTTTGAGGGAG
TTCAGCATTAGCATGGAGTGTGGTCCTCTCCAAGCCTTTCCATCTATCCT
TGTCTTTGTGCACTAATTCCCTCTCTTTTATAAGGGCAGAGGTCATATCG
AATCTGGTTCTATCCTAATGACCTTTTGATTAATTACATCTGCAGTGGTC
ATTTTCTAAGTGTCACCCTTGAATGCGCAGCCATGTATGTGCTGTTGAGC
TTTCTCATCCGCTCTGGGTGAGCTTGACAGAAATTCTGCAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTATAGAGTTACAAAACTGATTTAAAAAAA
AAGCCATGAAAGAATTTAATACTCAACGTGTCTTGCTCTACTATTCTCCG
CAGGAATTATGTATTTATTTGAAATATGCTGATCTTTTCTGAGCCATATT
TAGAATCACTTTTTGAGATTTTATAATTAAAAAAAAACGTTATTTAAACA
GTCATATAAGAAAAGCTGCCTTGTTGTGTTTTCATTAATCCACCCAGTGA
AGAAAGCAAAACTTCTCTTCTGATGTTCCACCTCTCCATACTCATGGTCA
ATACTTGCTATTATTAGTTTCTCATTATTTCAAAAAAAATTAAAAATCCT
CATAAGATTAAAGTTTACCAGTAGTGAAGATATCATGGATAAGCAAACAA
ATTGATAAGATGTAGAATGTGTTGTATAAATAAGTAGCCATTTTTGCTTC
AAAAATTAATCATGTTTCCTTTTTTCCCCTTTTCTTTTTAAGAAAGTGTT
TAATTATGTATTCNATATATGCATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTNGTNTTTTTGTTTTTNTNTTTTTTTTGTTTGTGTTGTTTGTGTTTTTT
TGTTTGTTTGTTTTTTTTTTGGTTTTGGCTTTGCATTGTGTGTCATGTTT
TATCCTTCCTTCTTTTCACCCTAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_j06.b1 MSMg01no301_j06.b1 CHROMAT_FILE:
MSMg01no301_j06.b1 PHD_FILE: MSMg01no301_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
         (657 letters)



>mm_chr6_138885447_138886503
          Length = 1057

 Score = 1073 bits (555), Expect = 0.0
 Identities = 623/649 (95%), Gaps = 7/649 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcctttcaacatatcagctgatgctcgcatttgtgtgtctgaacagactctgcttatagc 68
           |||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 883 tcctctcaacatatcagctgatgcttgcatttgtgtgtctgaacagactctgattatagc 824

                                                                       
Query: 69  tatactaggattgatttatttgctcactagttaatgacctggttgcttagaatttgaagt 128
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 823 tatactaggattgatttatttgcttactagttaatgacctggtttcttagaatttgaagt 764

                                                                       
Query: 129 gacaatggatagccctgctacaattattccaaattaggtcactgtatgacatgtatgtat 188
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gacaatggacagccctgctacaattattccaaattaggtcactgtatgacatgtatgtat 704

                                                                       
Query: 189 gcataagaatatacaatatacacgtgtacctatatgtgtgttttaagtatctcagaaata 248
            || ||||||||||   ||    ||||||||||||||||||||||||||||| |||||||
Sbjct: 703 acacaagaatatac---at----gtgtacctatatgtgtgttttaagtatctaagaaata 651

                                                                       
Query: 249 cccatggggttgtcttttgatgcagtcagtatgcatatttggttttctaatttttcacca 308
           || ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 650 ccgatggggttgtcttttgatgcagtcagtatgcatatttggctttctaattcttcacca 591

                                                                       
Query: 309 ggcttcttgccaaatggtccatattggtctggtaagattacgacaaaaatagtgtgtctt 368
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 590 ggcttcttgccaaatggtccatattggtctggtaagattaccacaaaaatagtgtgtctt 531

                                                                       
Query: 369 gggtgtctttagcaatagaagatgcatgctaggttaccctggaggttctatgcctggtat 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gggtgtctttagcaatagaagatgcatgctaggttaccctggaggttctatgcctggtat 471

                                                                       
Query: 429 gagggtggatagtcctaacacctttgagggagttcagcattagcatggagtgtggtcctc 488
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 470 gagggtggatagtcctaatacctttgagggagttcagcattagcatggagagtggtcctc 411

                                                                       
Query: 489 tccaagcctttccatctatccttgtctttgtgcactaattccctctcttttataagggca 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tccaagcctttccatctatccttgtctttgtgcactaattccctctcttttataagggca 351

                                                                       
Query: 549 gaggtcatatcgaatctggttctatcctaatgaccttttgattaattacatctgcagtgg 608
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 350 gaggtcatatcgaatctggttctatcctaatgacctcttgattaattgcatctgcagtgg 291

                                                            
Query: 609 tcattttctaagtgtcacccttgaatgcgcagccatgtatgtgctgttg 657
           ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 290 tcattttctaagtgtcaccattgaatgcacagccatgtatgtgctgttg 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no301_j06.g1 MSMg01no301_j06.g1 CHROMAT_FILE:
MSMg01no301_j06.g1 PHD_FILE: MSMg01no301_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
         (515 letters)



>mm_chr6_138729692_138730607
          Length = 916

 Score =  905 bits (468), Expect = 0.0
 Identities = 505/518 (97%), Gaps = 5/518 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatagagttacaaaactgattt--aaaaaaaaagccatgaaagaatttaatactcaacg 58
           |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttatagagttacaaaactgatttaaaaaaaaaaagccatgaaagaatttaataatcaacg 260

                                                                       
Query: 59  tgtcttgctctactattctccgcaggaattatgtatttatttgaaatatgctgatctttt 118
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttgctctactattctctgcaggaattatgtatttatttgaaatatgctgatctttt 320

                                                                       
Query: 119 ctgagccatatttagaatcactttttgagattttataattaaaaaaaaacgttatttaaa 178
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 321 ctgagccatatttagaatcactttttgagattttataa-taaaaagaaacgttatttaaa 379

                                                                       
Query: 179 cagtcatataagaaaagctgccttgttgtgttttcattaatccacccagtgaagaaagca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtcatataagaaaagctgccttgttgtgttttcattaatccacccagtgaagaaagca 439

                                                                       
Query: 239 aaacttctcttctgatgttccacctctccatactcatggtcaatacttgctattattagt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||
Sbjct: 440 aaacttctcttctgatgttccacctctccatactcatggtcaatacttgctatgaaaagt 499

                                                                       
Query: 299 ttctcattatttc-aaaaaaaattaaaaatcctcataagattaaagtttaccagtagtga 357
           ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 500 ttctcattatttcaaaaaaaaattaaaaatcctcatgagattaaagtttagcagtagtga 559

                                                                       
Query: 358 agatatcatggataagcaaacaaattgataagatgtagaatgtgttgtataaataagtag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agatatcatggataagcaaacaaattgataagatgtagaatgtgttgtataaataagtag 619

                                                                       
Query: 418 ccatttttgcttcaaaaattaatcatgtttccttttttccccttttctttttaagaaagt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccatttttgcttcaaaaattaatcatgtttccttttttccccttttctttttaagaaagt 679

                                                 
Query: 478 gtttaattatgtattcnatatatgcatgtgtgtgtgtg 515
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 680 gtttaattatgtattc-atatatgcatgtgtgtgtgtg 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space:   457530
Effective search space used:   457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)