Query= MSMg01no301_j06.b1 MSMg01no301_j06.b1 CHROMAT_FILE:
MSMg01no301_j06.b1 PHD_FILE: MSMg01no301_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
(657 letters)
>mm_chr6_138885447_138886503
Length = 1057
Score = 1073 bits (555), Expect = 0.0
Identities = 623/649 (95%), Gaps = 7/649 (1%)
Strand = Plus / Minus
Query: 9 tcctttcaacatatcagctgatgctcgcatttgtgtgtctgaacagactctgcttatagc 68
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 883 tcctctcaacatatcagctgatgcttgcatttgtgtgtctgaacagactctgattatagc 824
Query: 69 tatactaggattgatttatttgctcactagttaatgacctggttgcttagaatttgaagt 128
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 823 tatactaggattgatttatttgcttactagttaatgacctggtttcttagaatttgaagt 764
Query: 129 gacaatggatagccctgctacaattattccaaattaggtcactgtatgacatgtatgtat 188
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gacaatggacagccctgctacaattattccaaattaggtcactgtatgacatgtatgtat 704
Query: 189 gcataagaatatacaatatacacgtgtacctatatgtgtgttttaagtatctcagaaata 248
|| |||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 703 acacaagaatatac---at----gtgtacctatatgtgtgttttaagtatctaagaaata 651
Query: 249 cccatggggttgtcttttgatgcagtcagtatgcatatttggttttctaatttttcacca 308
|| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 650 ccgatggggttgtcttttgatgcagtcagtatgcatatttggctttctaattcttcacca 591
Query: 309 ggcttcttgccaaatggtccatattggtctggtaagattacgacaaaaatagtgtgtctt 368
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 590 ggcttcttgccaaatggtccatattggtctggtaagattaccacaaaaatagtgtgtctt 531
Query: 369 gggtgtctttagcaatagaagatgcatgctaggttaccctggaggttctatgcctggtat 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gggtgtctttagcaatagaagatgcatgctaggttaccctggaggttctatgcctggtat 471
Query: 429 gagggtggatagtcctaacacctttgagggagttcagcattagcatggagtgtggtcctc 488
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 470 gagggtggatagtcctaatacctttgagggagttcagcattagcatggagagtggtcctc 411
Query: 489 tccaagcctttccatctatccttgtctttgtgcactaattccctctcttttataagggca 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tccaagcctttccatctatccttgtctttgtgcactaattccctctcttttataagggca 351
Query: 549 gaggtcatatcgaatctggttctatcctaatgaccttttgattaattacatctgcagtgg 608
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 350 gaggtcatatcgaatctggttctatcctaatgacctcttgattaattgcatctgcagtgg 291
Query: 609 tcattttctaagtgtcacccttgaatgcgcagccatgtatgtgctgttg 657
||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 290 tcattttctaagtgtcaccattgaatgcacagccatgtatgtgctgttg 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_j06.g1 MSMg01no301_j06.g1 CHROMAT_FILE:
MSMg01no301_j06.g1 PHD_FILE: MSMg01no301_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
(515 letters)
>mm_chr6_138729692_138730607
Length = 916
Score = 905 bits (468), Expect = 0.0
Identities = 505/518 (97%), Gaps = 5/518 (0%)
Strand = Plus / Plus
Query: 1 ttatagagttacaaaactgattt--aaaaaaaaagccatgaaagaatttaatactcaacg 58
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttatagagttacaaaactgatttaaaaaaaaaaagccatgaaagaatttaataatcaacg 260
Query: 59 tgtcttgctctactattctccgcaggaattatgtatttatttgaaatatgctgatctttt 118
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttgctctactattctctgcaggaattatgtatttatttgaaatatgctgatctttt 320
Query: 119 ctgagccatatttagaatcactttttgagattttataattaaaaaaaaacgttatttaaa 178
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 321 ctgagccatatttagaatcactttttgagattttataa-taaaaagaaacgttatttaaa 379
Query: 179 cagtcatataagaaaagctgccttgttgtgttttcattaatccacccagtgaagaaagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtcatataagaaaagctgccttgttgtgttttcattaatccacccagtgaagaaagca 439
Query: 239 aaacttctcttctgatgttccacctctccatactcatggtcaatacttgctattattagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 440 aaacttctcttctgatgttccacctctccatactcatggtcaatacttgctatgaaaagt 499
Query: 299 ttctcattatttc-aaaaaaaattaaaaatcctcataagattaaagtttaccagtagtga 357
||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 500 ttctcattatttcaaaaaaaaattaaaaatcctcatgagattaaagtttagcagtagtga 559
Query: 358 agatatcatggataagcaaacaaattgataagatgtagaatgtgttgtataaataagtag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agatatcatggataagcaaacaaattgataagatgtagaatgtgttgtataaataagtag 619
Query: 418 ccatttttgcttcaaaaattaatcatgtttccttttttccccttttctttttaagaaagt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccatttttgcttcaaaaattaatcatgtttccttttttccccttttctttttaagaaagt 679
Query: 478 gtttaattatgtattcnatatatgcatgtgtgtgtgtg 515
|||||||||||||||| |||||||||||||||||||||
Sbjct: 680 gtttaattatgtattc-atatatgcatgtgtgtgtgtg 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|