XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAAGTCAGGAGTGTAAAAGAGGAGGATTGTTTGTGGACAACCAAGTCTT
GTCTAGGGAGACTCTGTCTCAAAGATTACAAATGACACAAACAAAGAAAC
AAAACAGAGCTCAGTGGACTCTGACCTCTGCATAAACAAGGAACATAAGT
CTTGGTGTGAGTCCATCTCCCCTACTGCACAGGGTTTCCATCTGCAGAAA
TAATATTTGTTATTCATAGGAAATTCAAGTTTAACGAGGCTCCTGTTTTT
TACTTGCTAATCTAAGAGCTCTAATTTGTACATTAATAAGAACTAATTTA
CTTTGGAACCGTGTCACATCCATTTATGCCTTATTAATAAATACAGTACA
ATGCCCTGCCACAATGCAGAGCATGCTGAGAGGGATTGATTCCAACTGGG
AACTTCATTTGATGGAAAGAGCTGGAGAATTTCTTGTGGCTAGTGAAGGC
TCCTCTACTGAGAAACATCTACCAATCTTTTGATAGCATATTATCTGAAA
TATTTTTAAGATATGTCTAGCTCCGTTGTCACATAGCTAGAGAAGGAGAT
TAAGGTACTAGTGAGCACAGGTCTACATTTCTTCCTTTACCCTTCCCAGG
GAGAACTCATGGCTATTTTCCTTCTCAATATGTGGGCTAATACTCTGTTG
GGTCCTTTCTGTCATTCGGGTGATGGTGAACCTGCCATGTACTTCTGGGT
TCTTTTAA

CAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAGATGAGCTCAATAATATATATATATAT
ATATATATATATATATATACCCATATATATATATATATATATATATATAT
ATGTAGCTCTCTAGTGGGAGCGCGCGGGCGCGTGCGAGGTGCCACCCATA
TGTCGCCGGGCGGGCGGGCGCGGGGGCGCCCCCCCCGCCTATTCGCGCGG
GCCGCCCCGGCACATATACATACCTATACACACACCCCCCACCCCCCCCC
ATCTTCACCCCCGCCCCTTTTTTTTTTACTCCCCCCTCCCCTCTGCCGCC
CGGAGGGAGTTTTTTTTTTTTCCCCCCCCCCCCCTCCCGGGGTTTGTTGC
CGTTCGTTATCCTCCGCGCGCCCCCCCCCCCCAAATAAAACAAACAATTC
CTCCGGGCGCGCGGGGGCCCCCCCCCCCCTCTCCGCTCCCCTTTCCCGTC
CCCCCCCCCCTCCCCTGCCCCCCCTCGCCCCCTTCCCCCCCCCCCCCCCC
CCTTCGCTGCGCCCCTCTCCCTTTTTTTGCCCCTTTCCCTCTTCCCCCCC
CCCGCTTCCCTTCCCTTGCCTGTTTCCCCCCCCCCCCCCGTTTTTCCCCC
CTCCCCCCCTCTCCCATCTTTCCCCCATGCCACGCCCCCCCCCCCCTTTC
TTCCTTCCCCTTTCCCCCTCTCTTCCCGTCCCCGCTTTCCCCCCGTCCCT
CCCGCCCGTGTCCCTTTCCCCCCCCGCCTCCCCCCCTTGCTTCCCCCGCT
TTCCCCCTCCCCGCGCCTCCCGCCTCCCCCCCCTTTCCCCTCCCCTCCCG

Query= MSMg01no302_j22.b1 MSMg01no302_j22.b1 CHROMAT_FILE:
MSMg01no302_j22.b1 PHD_FILE: MSMg01no302_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:18 2005
         (719 letters)



>mm_chr6_135865412_135866530
          Length = 1119

 Score = 1228 bits (635), Expect = 0.0
 Identities = 635/635 (100%)
 Strand = Plus / Minus

                                                                        
Query: 85   gattacaaatgacacaaacaaagaaacaaaacagagctcagtggactctgacctctgcat 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 gattacaaatgacacaaacaaagaaacaaaacagagctcagtggactctgacctctgcat 1060

                                                                        
Query: 145  aaacaaggaacataagtcttggtgtgagtccatctcccctactgcacagggtttccatct 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 aaacaaggaacataagtcttggtgtgagtccatctcccctactgcacagggtttccatct 1000

                                                                        
Query: 205  gcagaaataatatttgttattcataggaaattcaagtttaacgaggctcctgttttttac 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  gcagaaataatatttgttattcataggaaattcaagtttaacgaggctcctgttttttac 940

                                                                        
Query: 265  ttgctaatctaagagctctaatttgtacattaataagaactaatttactttggaaccgtg 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  ttgctaatctaagagctctaatttgtacattaataagaactaatttactttggaaccgtg 880

                                                                        
Query: 325  tcacatccatttatgccttattaataaatacagtacaatgccctgccacaatgcagagca 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  tcacatccatttatgccttattaataaatacagtacaatgccctgccacaatgcagagca 820

                                                                        
Query: 385  tgctgagagggattgattccaactgggaacttcatttgatggaaagagctggagaatttc 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819  tgctgagagggattgattccaactgggaacttcatttgatggaaagagctggagaatttc 760

                                                                        
Query: 445  ttgtggctagtgaaggctcctctactgagaaacatctaccaatcttttgatagcatatta 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ttgtggctagtgaaggctcctctactgagaaacatctaccaatcttttgatagcatatta 700

                                                                        
Query: 505  tctgaaatatttttaagatatgtctagctccgttgtcacatagctagagaaggagattaa 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  tctgaaatatttttaagatatgtctagctccgttgtcacatagctagagaaggagattaa 640

                                                                        
Query: 565  ggtactagtgagcacaggtctacatttcttcctttacccttcccagggagaactcatggc 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  ggtactagtgagcacaggtctacatttcttcctttacccttcccagggagaactcatggc 580

                                                                        
Query: 625  tattttccttctcaatatgtgggctaatactctgttgggtcctttctgtcattcgggtga 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  tattttccttctcaatatgtgggctaatactctgttgggtcctttctgtcattcgggtga 520

                                               
Query: 685  tggtgaacctgccatgtacttctgggttcttttaa 719
            |||||||||||||||||||||||||||||||||||
Sbjct: 519  tggtgaacctgccatgtacttctgggttcttttaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)