Query= MSMg01no302_n16.b1 MSMg01no302_n16.b1 CHROMAT_FILE:
MSMg01no302_n16.b1 PHD_FILE: MSMg01no302_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:35 2005
(365 letters)
>mm_chr6_83377333_83378097
Length = 765
Score = 634 bits (328), Expect = 0.0
Identities = 351/362 (96%), Gaps = 8/362 (2%)
Strand = Plus / Minus
Query: 5 gaattcatcaggttcc--gaagcagagcttgggaggctactggtgaggtgtgctccacag 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattcatcagg--gcaggaagcagagcttgggaggctactggtgaggtgtgctccacag 412
Query: 63 ctgtgtgcccagggtagcatcttgctttctactgttctggtctagagtctgtgtctcccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctgtgtgcccagggtagcatcttgctttctactgttctggtctagagtctgtgtctcccc 352
Query: 123 ctgcccccgcccccagatggttctgaggccgagttttctgcctgtcagcatgctagactt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctgcccccgcccccagatggttctgaggccgagttttctgcctgtcagcatgctagactt 292
Query: 183 tcccatggccattgtatttcaagcttccattgggagctgtggaatgaaaggcatttgttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcccatggccattgtatttcaagcttccattgggagctgtggaatgaaaggcatttgttt 232
Query: 243 ttcctctttgatgtgttgtgtgagcatgtgggttggtttgtggaggaggtcagaggacag 302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 231 ttcctctttgatgtgttgtgtgagcatgtgggctggtttgtggaggaggtcagaggacag 172
Query: 303 acagcctgacaggttggttctttccctctacgacttgggtcctggggattgaaatcagat 362
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 171 ----cctgacaggttggttctttccctctatgacttgggtcctggggattgaaatcagat 116
Query: 363 cg 364
||
Sbjct: 115 cg 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_n16.g1 MSMg01no302_n16.g1 CHROMAT_FILE:
MSMg01no302_n16.g1 PHD_FILE: MSMg01no302_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:35 2005
(162 letters)
>mm_chr6_83217712_83218273
Length = 562
Score = 240 bits (124), Expect = 4e-68
Identities = 158/182 (86%), Gaps = 20/182 (10%)
Strand = Plus / Plus
Query: 1 caagtggctgccttgtccacctgatcatcaaatggcttctatgaatccagctcttgtcct 60
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct: 201 caagtggctgccttgtccacctgatcatcaaatggcttctaggaacccagctcttgccct 260
Query: 61 cttgtttgtgtggcaaatgctttaaacagctgagctctctccccacccccatcttcattt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtttgtgtggcaaatgctttaaacagctgagctctctccccacccccatcttcattc 320
Query: 121 cccccc--------------------gcttttcaagatagtagatagtaggttgggttgt 160
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccccccccccccccccccccccccgcttttcaagatagtagatagtaggttgggttgt 380
Query: 161 tt 162
||
Sbjct: 381 tt 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space: 85316
Effective search space used: 85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
