BAC Information

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BAC

Clone NameMSMg01-303E22
Chromosome6 (Build37)
Map Location 70,713,963 - 70,714,151
singlet/doubletsinglet
Overlap genenone
Upstream geneIgk, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C
Downstream geneRpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303E22.T7 (MSMg01no303_e22.b1)MSMg01-303E22.TJ (MSMg01no303_e22.g1)
ACCAG428938AG428939
length724738
length of high quality
(start - end)
190 (112 - 301)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no303_e22.b1 PHD_FILE: MSMg01no303_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:11 2005CHROMAT_FILE: MSMg01no303_e22.g1 PHD_FILE: MSMg01no303_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTAAAGACTCACAATTTCGTACCGGGCGGAATCNGCTCTGT
TTCCTGATGAGATGGAAAAGGNACTTACACTGAGCCCCTGGAAAGCAGGG
TTTCACCCAGCTGAGGATGGTGGCATGTTACATGGCAGTGCCTGGCAACA
GGACACATTCCAAGAGAAACCCACTTTCCTTCCTCACTGTGGGCTCTGAC
TGAACCATCCCTGAGTCGGTTCTACCCAAGTCCCTTGATTTCCCCCACGG
CATCCTGCCATGACTACAAACCTTTCCCAAAAGCCAGACTCAAGGCCTTA
TATATTGTTCTGGGGCATGCACTGTTCTTGCAGCGGGCCCAAGTTTGGTT
CCCACATCCTAACACCCATACCACCCAGCTCACAACTACCTGCAACTCCC
CCCCAGTCTCCAATACCCTTTTCTGACTTCTGCAGGCACCAACATTCATG
TGTACATATTCATACACAGAAACACAAATACAATTTTTATTTTGTTTTGT
TTTTTGACAGCATCTGTGCAGCTCTAGCTCTCCTGAAACTCACTAGGCTT
ATACTCACGATATCTGCCTGTCTCTGCCTCTCAGTGCCGGGATTAAAGGA
GTGCGCCACCATACCTACCATATAAAAACATAGCTCAATTTTTTTATTTA
TCCTCCAAGCCAAACTCCAACTTGTCCTACGTGCCCAAGATAAAGCCAAG
ATCCTAATTGAAACTGGCTTTTCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACTCCTAGCTCAGCATAGCCCAGACATGGC
GGTGCACACTTACATTTTGGTTACGTTTGTTTTTGTCTTTGAGACAGGTC
TCTCTATGTAGCCCTGGCTAGCCTAGAACTCACTATGTAGACCAGGCCAG
CATTGAACTCGCAGAGATCCACTTGCCTCTGCCTCATATGGGCTGAGACT
GAAGCTGTGTGGTACACGTTTCTAATCTTAGCATTCAGGAGGTTGAGATA
GGAAAATCAGAAGTTTGAGGTAATTCTCAGCTACTTAGCAGCTTTGAGGC
CAGCCTGGTTTGGTTTTATACCCTCCCACCCAGGAAAGGAGGGTAGGGGA
GAGAGACAGACTGACCGACAGACAGACAGAGATACCCACAACATGGTTTC
CTTGAAGATTTCAGGGTTGATCATGAGAGACAGGATTGGCTCTTCATGTT
TATCCTTATTTGAGAATTTGGCTCAACGTTCTTTATCTTGGACATCCTGT
TCTGAACTGTTGGAGTTCCAGATCTGGGCCTACCTCCTCTAGACAGTGTG
AGCCCTGATTCCCACTGGCTGAGAAGATCCCACTGTATGCACATCTCTGC
AGTTCAGCATCAGCAAGCTTGAAATGGCTGTGCTGGGGATTTACACCACA
AGGATTGGTGGATGCTGTAAAGTCATGGCTTCTGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_e22.b1 MSMg01no303_e22.b1 CHROMAT_FILE:
MSMg01no303_e22.b1 PHD_FILE: MSMg01no303_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:11 2005
         (190 letters)



>mm_chr6_70713760_70714352
          Length = 593

 Score =  335 bits (173), Expect = 1e-96
 Identities = 185/189 (97%), Gaps = 3/189 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggatggtggca-tgttacatggcagtgcctggcaacaggacacattccaagagaaaccca 62
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggatggtggcaatgttacatggcagtgcctggcaacaggacacattccaagagaaaccca 263

                                                                       
Query: 63  ctttccttcctcactgtgggctctgactgaa-ccatccctgagtcggttctacccaagtc 121
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 ctttccttcctcactgtgggctctgactgaagccatccctgagtcggttctacccaagtc 323

                                                                       
Query: 122 cct-tgatttcccccacggcatcctgccatgactacaaacctttcccaaaagccagactc 180
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccatgatttcccccacggcatcctgccatgactacaaacctttcccaaaagccagactc 383

                    
Query: 181 aaggcctta 189
           |||||||||
Sbjct: 384 aaggcctta 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 593
Length adjustment: 8
Effective length of query: 182
Effective length of database: 585
Effective search space:   106470
Effective search space used:   106470
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)