BAC Information

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BAC

Clone NameMSMg01-303K11
Chromosome6 (Build37)
Map Location 105,056,567 - 105,056,754
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303K11.T7 (MSMg01no303_k11.b1)MSMg01-303K11.TJ (MSMg01no303_k11.g1)
ACCAG429186
length737739
length of high quality
(start - end)
---189 (122 - 310)
definitionCHROMAT_FILE: MSMg01no303_k11.b1 PHD_FILE: MSMg01no303_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:37 2005CHROMAT_FILE: MSMg01no303_k11.g1 PHD_FILE: MSMg01no303_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGA
ATGCAGTGGGAGGCCTGGAGGCCGCCTTTCAAACAAATTTAGGTGAACTA
TATTTTCCCACAAAAAAGTCTTTCCAAAAACTATTTTCAATGATGCAACA
TAGGCCATCTTATCCTTCGAAGGAGAGTGGGTCACATTGCATATCCTTCA
ATCTTCAAAATCAAGGCATATCATAAATTGTGTACTAAATACAAAATATG
ATTACTTCAATGCACGTCTATCTTTTAAAATTTGAAATGCGAAAATTTCA
ATACATCTGCAAATAAAACTAAAAAATGTGTTACTAAAAAGAAAGAGGAA
AATTGAAGCTTTTTTTTTATAAAATTTCTTCATAAAAAGGTATGCAAATG
ATCTTATCTACAGCGCACCACAACTTTAAATACATACACAATTGAAGTAA
ACCTGCCCCCCCCCATAAAATATTCAAATTCATATGACCCGACTTTAACT
AGGAGCTGCGTATCTTTCACTGTTCACCAATACACTTGGAGTGAGTCTAA
AAACCAAAAACCATGTTTTATAATTTAGAAACCTGCCCAATTTCTTAAGG
ATTGATTAGCACTCACAGCTTTTTTATCTCTTTATATAGATGAAACACAA
CATCTCTAATTTTTCCTCTTAATCATGTTATACATCCATTCTATTTTATC
ACCATTTTACAATTATCCATGTAATATCTACCGGCTTCCTCATATTTCGC
AACAAGTAGTTATTTCAATTTGACCTCCGCACATCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_k11.g1 MSMg01no303_k11.g1 CHROMAT_FILE:
MSMg01no303_k11.g1 PHD_FILE: MSMg01no303_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:37 2005
         (189 letters)



>mm_chr6_105056367_105056955
          Length = 589

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagagtgggtcacattgcatatccttcaatcttcaaaatcaaggcatatcataaattgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ggagagtgggtcacattgcatatccttcaatcttcaaaatcaaggcatatcaaaaattgt 260

                                                                       
Query: 61  gtactaaatacaaaatatgattacttcaatgcacgtctatcttttaaaatttgaaatgcg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacaaaatacaaaatatgattacttcaatgcacgtctatcttttaaaatttgaaatgcg 320

                                                                       
Query: 121 aaaatttcaatacatctgcaaataaaactaaaaaatgtgttactaaaaagaaagaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatttcaatacatctgcaaataaaactaaaaaatgtgttactaaaaagaaagaggaaa 380

                   
Query: 181 attgaagc 188
           ||||||||
Sbjct: 381 attgaagc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)