Query= MSMg01no305_e02.b1 MSMg01no305_e02.b1 CHROMAT_FILE:
MSMg01no305_e02.b1 PHD_FILE: MSMg01no305_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:57 2005
(436 letters)
>mm_chr6_139096003_139096838
Length = 836
Score = 710 bits (367), Expect = 0.0
Identities = 399/417 (95%), Gaps = 13/417 (3%)
Strand = Plus / Plus
Query: 16 gaattcc-tctaatgtttaactctaggtctctgcatctgtttccatcacctgctgggtag 74
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 203 gaattccatctaatgtttaactctaggtctctgcatctgtttccatcagctgctgggtag 262
Query: 75 atcctcaaaggcccctgtgtgcaatcacaacagagtgttattaatagtgttattaatagt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcctcaaaggcccctgtgtgcaatcacaacagagtgttattaatagtgttattaatagt 322
Query: 135 gtcaggaatgattcttgcccttgggatggg------------ccagtcatttgccctgta 182
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 gtcaggaatgattcttgcccttgggatgggtcacacgttgggccagtcatttgccctgta 382
Query: 183 ctttttacagtcaggaaaaagtttgggtcaaaggttttatgagtcatttgttgtccttat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctttttacagtcaggaaaaagtttgggtcaaaggttttatgagtcatttgttgtccttat 442
Query: 243 ccctctactgggggtcctgccttgctacaggaggtggccaacttaggttccatataccct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccctctactgggggtcctgccttgctacaggaggtggccaacttaggttccatataccct 502
Query: 303 actattttgattagcagaatggtcctttcaactcagttataacattttaagcgatttaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 actattttgattagcagaatggtcctttcaactcagttataacattttaagtgatttaaa 562
Query: 363 acatatttttaacgtgtttgtattatactggccactcattgtcacttctctcccatt 419
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 563 acatacatttaacgtgtttgtaatatactggccactcattgtcacttctctcccatt 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_e02.g1 MSMg01no305_e02.g1 CHROMAT_FILE:
MSMg01no305_e02.g1 PHD_FILE: MSMg01no305_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:57 2005
(361 letters)
>mm_chr6_139247577_139248336
Length = 760
Score = 543 bits (281), Expect = e-159
Identities = 299/305 (98%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 1 aaaaacaaaaacaaaacaaacaaacaaacaaacaaaaccagattgactcctgagctgaaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 540 aaaaacaaaaacaaaacaaacaaacaaacaatcaaaaccagattgactcctgagctgaaa 481
Query: 61 ggaaacgtgtatctttgccagtatccagtgcaataacagctttctgagttttacaccaaa 120
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaaatgcgtatctttgccagtatccagtgcaataacagctttctgagttttacaccaaa 421
Query: 121 atgaccagtttcacttaagctatttattgcataaaaccactaatggattagatttaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgaccagtttcacttaagctatttattgcataaaaccactaatggattagatttaaaag 361
Query: 181 gcaatgacctacaatggcacccgatagttgtgcttaaaatgggtggcagagagcatgatg 240
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 360 gcaatgacctacaatggca-ccgattgttgtgcttaaaatgggtggcagagagcatgatg 302
Query: 241 gccgtgtatttaaacacagatataaaagataaacattgtacatttgtgcttacatcactc 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 301 gccgtgtatttaaacacagatatgaaagataaacattgtacatttgtgcttacatcactc 242
Query: 301 tctcc 305
|||||
Sbjct: 241 tctcc 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 760
Length adjustment: 9
Effective length of query: 352
Effective length of database: 751
Effective search space: 264352
Effective search space used: 264352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
