BAC Information

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BAC

Clone NameMSMg01-305I01
Chromosome6 (Build37)
Map Location 75,253,450 - 75,253,840
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306
Downstream geneLOC100042942, LOC668143, EG668145, EG546907, LOC100042952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I01.T7 (MSMg01no305_i01.b1)MSMg01-305I01.TJ (MSMg01no305_i01.g1)
ACCAG430448AG430449
length1,2541,251
length of high quality
(start - end)
409 (31 - 439)391 (71 - 461)
definitionCHROMAT_FILE: MSMg01no305_i01.b1 PHD_FILE: MSMg01no305_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:31 2005CHROMAT_FILE: MSMg01no305_i01.g1 PHD_FILE: MSMg01no305_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCTCACTCGNCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CTACATAGTTATTTATTTAGTAATATTTCCTAGTGCCTTTATACATCATA
CCATTACTTTTCTTATTGTGTATTCTCCTAATTCCCAAACAATTATCAAT
AATATACTACTGCTTTTCTTTCCCTTGGAGTTTTTCATCCAATTTAAGAT
GTTAACTCAATGAATATAGCCATGGGATCTTTGTAAATATACTGACAGTT
TGAGATTACAAACATCTTTTTACACAAGTTGATTGCATATTGTCATTTTT
TTTTCTGAAATGCTCAGTAGGAAAGAAGAGCTTAACAGATGAGCAGATAT
GACTTAACTTCACCATTATCCAATCTAAGCAGCTCAAGATCTCTTTGTTT
ATGCTTGTTTTTCTGCTGGTCTCTCTTTCTTTTTCNTNTTCCNTTTTTTT
TTTTTCTCCCCCCCCCCNCNTTTTTCCTTTTTCTTAAAAAAAAAAGAGGG
CGTTTTTGNTTCTTTTTGAGTTTTGCGTTTTGTGTTTTGACCCTTTGACA
GGAAGTTATCCCCAGCTGCAATTTCACCAACCAAAATTACATCCTGAAGC
GACTGTTAGTTTAGTACATTAGCAGGGGCTACAATTTCAATGTGACATTC
CACTAATTGTTATTAGGCTTAAAAGACTCCAAATTCCAGAGATGACCTTT
TCAGAACTGCCTAATTGGAAGAGTTCCCATCCTTCCCAGGGACTTCATAT
TTAGCATCTATAAATAATCTACAGGAACATTTGCCAATATCAAGCACACT
GTGAAGTCACTTCCACTTATTCTGATCCCCACATCTTATCCCATTCATCA
CTTGGACTGAAGCATTTAACCGCTATCAGCCTTCTTTCCTAACAATGGTA
ATTATTTCCAGCATTTTTAATGGAAAATTCAATTATAAAACCTTCAAAGA
CTTACCCCATTTAAATGCAATAAAAACTATCAGCTTAACAATAAATAAAG
GATAAAAGCTAAACCTTTAAAGATAAAAGAATCTGAGGATAGCCTTAACT
TGAAGCAAAATCTCGAAAGGGGAAACCCTAAATCTAAAAACTATTCTTTT
CATTTAACGAGAACCCTTTAGACCGGTTTTAAAACCCCTCCCGAATAGGG
TTTTGGGCTTTTTATTTCTTCTTAAAAAAAAAAATTGCTTTTTGGCCCCG
GCCTATACAAAAAAAATCTTCTAACAACTTTTTAATTTGGTATTTATAAC
CCAA
NNGGATTTCACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGATCTGGCCATAGATTAATCAACATCCT
GGCCTTTTGATGCACCTGCTGCAAGCAAAACACAATCTCCCCAGGTGTGG
CTTGGCATGATTGAGAGGTAGTCAGTGATAAGACTCCCTGGGCATGTCAC
CAACCTAAGACAGGGATCAAACCAATGCTGTTTGTCACCCAAGGACGGGT
AAGGGGCATGGCTGCGGGGGGCTATCTACAGACATTCTCTCTGCCAAAAA
AGAAAAAAGGGGGAATTGTTAGGAGCAGGTGTGGCGGCAGTCCTAAAGGC
GCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCATATT
TTTTACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATTCAGGTGAAT
CTTTTTTTTTCCCCCCCCCCCCCTGNTGNCCTGATTAACTAAAAAAAAGG
GGCTGGTGAGGTGGCGTGACCTGCTGTGCGTGGATGGGAACTGAGAGTAT
AAAAGAGTGAGAGGCCCGGGTTAGAGGGAGGATTATTATTCGAGAGAGGA
TTACTATTAGGGGGGAGATATAAACAGGGGAGATATAAACAAGGGAGATA
TAAACAAGGAAGATATAAACAGGGGAGATATAAACAAGGGAGATATAAAC
AAGAAGAAATAGGACTGAATAAACGTGTGCAGAAGGATCCTGTAGCAGTG
TCGTTCTTGCTGGCGAGTTGGGGGCGCGCTCGACAGTCTGCACAACTCTT
CGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCATTGTCTCTGGTTTT
ATGTGGAGTTCCTTGATCCACTTAGGTTTGACCTTGGTACAAGGAGATAG
GAATGGATCGATTTGCATTCTTCTAAATAATAACCACCAGTTGTGCCAGC
ACCATTTTTTGAAATGCTGTCTTTTCTCCCCTGGATGGTTTTTTTCTCCC
TTGCCAAAAATCAATGGACCAAGGGGGGGGTTCATTTTCTGGGCTTCAAT
TCATTTCATTGGGCCAATTGTCTGCCAAAAATCAATTACCATGGCTTTTT
TACCCAATGTTCTTTAACAAAGCCTTTATAAATTGTGGGTTCCCCCAAAG
TTTTTTATTTTCTAAAAAATTTTTCTCCCCACGTTTTTTTTATCTCCCCA
AAATTTCCAACTCATTTTTTTTTTTTTTATAACAATCTGATCTTTATGTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i01.b1 MSMg01no305_i01.b1 CHROMAT_FILE:
MSMg01no305_i01.b1 PHD_FILE: MSMg01no305_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:31 2005
         (409 letters)



>mm_chr6_75253235_75254044
          Length = 810

 Score =  702 bits (363), Expect = 0.0
 Identities = 384/391 (98%), Gaps = 1/391 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctac-atagttatttatttagtaatatttcctagtgcctttatacatcataccat 74
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattctacaatagttatttatttagtaatatttcctagtgcctttatacatcataccat 547

                                                                       
Query: 75  tacttttcttattgtgtattctcctaattcccaaacaattatcaataatatactactgct 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tacttttcttattgtgtattctcctaattcccaaacaattatcaataatatactactgct 487

                                                                       
Query: 135 tttctttcccttggagtttttcatccaatttaagatgttaactcaatgaatatagccatg 194
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttcctttcccttggagtttttcatccaatttaagatgttaactcaatgaatatagccatg 427

                                                                       
Query: 195 ggatctttgtaaatatactgacagtttgagattacaaacatctttttacacaagttgatt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggatctttgtaaatatactgacagtttgagattacaaacatctttttacacaagttgatt 367

                                                                       
Query: 255 gcatattgtcatttttttttctgaaatgctcagtaggaaagaagagcttaacagatgagc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcatattgtcatttttttttctgaaatgctcagtaggaaagaagagcttaacagatgagc 307

                                                                       
Query: 315 agatatgacttaacttcaccattatccaatctaagcagctcaagatctctttgtttatgc 374
           |||||||||||||| |||||||||||||| | ||||||||||||||||||||||  ||||
Sbjct: 306 agatatgacttaacctcaccattatccaaaccaagcagctcaagatctctttgtccatgc 247

                                          
Query: 375 ttgtttttctgctggtctctctttctttttc 405
           |||||||||||||||||||||||||||||||
Sbjct: 246 ttgtttttctgctggtctctctttctttttc 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space:   320400
Effective search space used:   320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)