BAC Information

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BAC

Clone NameMSMg01-308L17
Chromosome6 (Build37)
Map Location 61,911,543 - 61,911,831
singlet/doubletsinglet
Overlap geneC130092O11Rik
Upstream geneMmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308L17.T7 (MSMg01no308_l17.b1)MSMg01-308L17.TJ (MSMg01no308_l17.g1)
ACCAG432721AG432722
length746748
length of high quality
(start - end)
317 (45 - 361)285 (440 - 724)
definitionCHROMAT_FILE: MSMg01no308_l17.b1 PHD_FILE: MSMg01no308_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:08 2005CHROMAT_FILE: MSMg01no308_l17.g1 PHD_FILE: MSMg01no308_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGA
ACATTTTTTCAGGAGCTTCTCCACCCTTTAGTATTCCTCAATTTATAATT
ATTTGTTTAGCTCTGAGCCCCATTTTTAATGAGGTTATTTGAATTTCTGC
AGTCCAGCTTCTTAAGCTCTTTGTATATATTGGATATTAGTCCCCTATCA
GATTTAGGATAAGTAAAACTCCTTTCCCAATCTGTTGGTGGCCTTTTTGT
CTTATTGATAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTCATGAGGT
CCCATTTGTCATTTTTTTATCTTACCGCCCACGCCATTGCTGTTCTGTTT
AGGAATTTTTCCCGACCCCCCATATCTTCGAGATTTTTTTCCCCACTTTC
TCCTCTATAAACTTCAGTGTCTCTGGTTTTATGTGGAGTTCTTTGATCCA
CTTAGACTTCAGCTTTGTACAAGGAGATAAGAATGAAACAATTCACATTC
TTCTACAGGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATAGTTTTAGCTCCCTTGTAAATGATCAAGTGACC
ATAGGTGTATGGATTAATTTCTGAGTATTCAATTCTATTCCACTGATCTA
CCTGTCTGTCGCTGTACCAGTACCATGCAGTTTTTATCACAATTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGTCATTCAAAAGCCTCAGTT
AGGGTTCATGGATAAAAATAGATATGACTCAGTCTTCTCAGAATACTTAT
TATCATGTACAGTGATTTTATGAAAATACCAGGCAAAATTAAATTATCAG
TTTTTTTTTTTAATGAAGAGGTGCATTCTTCCATTTTAAGAGGCATTAGA
GTTTGAAAATACACATTTTTCTGTTGACGTTCTACTTATGGTGAGTATTG
TTTAAGCATGAAATATTCTCTTGAATGTAATTATTTCATTATATCTTGAA
TGTCTTTGTCATTAGTTTTTTTTAGCTCTCCCCTGCCCATGTATTGAAAA
ATTATACATTTCTGTTTTAAATTGAAAATCAGTCAGAACTGGGATACCGT
AGGAAGAAATTCAGAAAATGAAATAAATTCTCTTCTAAATGGTGAAATAA
TTTATCTGTATGACTTTAAGTAGCATGGAAAAATCACACAGACTTTTTTC
CATTTGTGTTTTAATGGTAAGTATTAAGCAGATAATTAATTACTAGGTAT
TTTTAATATATATATATTAATTACTAGGTATTTTTAATTAAGTTATATAT
ATTCTTAAATGTCTGTCAGGCCAATGGAAATAATCATTTTTAGATGTTGA
ACAGTCGGAGGGTGAGCCCAGAAGAGGATAAAGTCTGAACTGTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_l17.g1 MSMg01no308_l17.g1 CHROMAT_FILE:
MSMg01no308_l17.g1 PHD_FILE: MSMg01no308_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:08 2005
         (285 letters)



>mm_chr6_61911343_61912027
          Length = 685

 Score =  532 bits (275), Expect = e-155
 Identities = 284/289 (98%), Gaps = 4/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggataccgtaggaagaaattcagaaaatgaaataaattctcttctaaatggtgaaata 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggataccataggaagaaattcagaaaatgaaataaattctcttctaaatggtgaaata 260

                                                                       
Query: 61  atttatctgtatgactttaagtagcatggaaaaatcacacagacttttttccatttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatctgtatgactttaagtagcatggaaaaatcacacagacttttttccatttgtgt 320

                                                                       
Query: 121 tttaatggtaagtattaagcagataattaattactaggtatttttaatatatatatat-- 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 tttaatggtaagtattaagcagataattaattactaggtatttttaatatatatatatat 380

                                                                       
Query: 179 --taattactaggtatttttaattaagttatatatattcttaaatgtctgtcaggccaat 236
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaattactaggtatttttaattaagttatatatattcttaaatgtctgtcaggccaat 440

                                                            
Query: 237 ggaaataatcatttttagatgttgaacagtcggagggtgagcccagaag 285
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaataatcatttttagatgttgaacagtcggagggtgagcccagaag 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)