BAC Information

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BAC

Clone NameMSMg01-309A09
Chromosome6 (Build37)
Map Location 71,662,251 - 71,662,776
singlet/doubletsinglet
Overlap geneReep1
Upstream geneIgk, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034
Downstream geneMrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309A09.T7 (MSMg01no309_a09.b1)MSMg01-309A09.TJ (MSMg01no309_a09.g1)
ACCAG432935AG432936
length718715
length of high quality
(start - end)
318 (45 - 362)526 (76 - 601)
definitionCHROMAT_FILE: MSMg01no309_a09.b1 PHD_FILE: MSMg01no309_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:30 2005CHROMAT_FILE: MSMg01no309_a09.g1 PHD_FILE: MSMg01no309_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAAAA
ATGTCTCACAAGGAAGCTGTGAACTTCGTACTATGTACATGTTAAAAAAT
AGTTCTGGGTGTGTACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGA
GTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCCACGAGATCC
AGCTGCAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGT
GGGTGGGACCATCTCTGGGCTGGTAGTCTTGATTCTATAAGAGAGCAGGC
TGAGCAAGCCGTTTTATCAAGCCCCCCCCCACACATCCCTCCATGGCATC
AGCTCCTGCTTCCTGACCTGCTTGAGTTCAAATCCTGACTTCCTTTGGTG
ATGAACAGCAATGTGGAAGTGTAAGCCTAATAAACCCTTTCCTCCCCAAC
TTGCTTCTTGGTCATGATGTTTTGTGCAGGAATAGCAACCCTAACTAAGA
CAGGGTGGAAATGAAAGAGATCACCAGTCTGTGTCTGGTCAAGGCAAACT
TCTGTTATGGATTCAGGAATGTGTGCTCACAACAGTCCATTTACCTATAC
AGCAAGTACACCTGGTTTTTATTCTTACTCAGGTGGTAACTGTGCCTTTT
TCCACCCCGATTGGTGTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGTCTCTTTCCATTTGTTTTGCA
CCAGTAAGGGGAATACCCGATGACACCCCACAGGCATTTCTTCCAGTCTC
CTCTCTTTCACATCCCTGACCCAGAATGAATGCTGCTGTACTCCAAATCC
TCCTCCTGGGAGCCAGCCAGACTTCAGCTTCTCTTTGTACTTTGCTAAAG
CTAACGTTTTGTTTTGCTTTAATTTGTAAAGGGTTTACCACATCTTATGC
ATGTGTGTGCCGCACTAAGGTAAGAGAACAACCTCTTTCTTTCCACCATG
GATTCCAGGGATTGAAGCAGAAAGTACTCTTACCTGATGAGCCACCTTAC
CAGCCCCTATTTTTTAAATTACATTTTGTTTTGTGGGACTATATAGACAA
TGGCTCATGTGTGGAACTCAGAGGACAACTTTTGGGAATTGGCTCTCTCC
TTCCACCACCATGTGGGACCTGGAAATCAAATTCAGGTTATCAGTCTTAG
GGGCAAGCCCCGTTTTACTAAGTGAGTCATCTTACTGGCCCCTTGTTTTG
TTTTGAGATTGGGTTTCCTGTGTTCTAGGCTGGACTTAAGCTTGACAAGG
ATATTCTTCAACTCCTGAGTCCTGTCTCCATCCTCTCAGTACAGGCATTA
TTGGGATGCCACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_a09.g1 MSMg01no309_a09.g1 CHROMAT_FILE:
MSMg01no309_a09.g1 PHD_FILE: MSMg01no309_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:30 2005
         (526 letters)



>mm_chr6_71662203_71663128
          Length = 926

 Score =  971 bits (502), Expect = 0.0
 Identities = 520/526 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtctctttccatttgttttgcaccagtaaggggaatacccgatgacaccccacaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 574 acagtctctttccatttgttttgcaccagtaaggggaatacccgaggacagcccacaggc 515

                                                                       
Query: 61  atttcttccagtctcctctctttcacatccctgacccagaatgaatgctgctgtactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atttcttccagtctcctctctttcacatccctgacccagaatgaatgctgctgtactcca 455

                                                                       
Query: 121 aatcctcctcctgggagccagccagacttcagcttctctttgtactttgctaaagctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aatcctcctcctgggagccagccagacttcagcttctctttgtactttgctaaagctaac 395

                                                                       
Query: 181 gttttgttttgctttaatttgtaaagggtttaccacatcttatgcatgtgtgtgccgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gttttgttttgctttaatttgtaaagggtttaccacatcttatgcatgtgtgtgccgcac 335

                                                                       
Query: 241 taaggtaagagaacaacctctttctttccaccatggattccagggattgaagcagaaagt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 334 taaggtaagagaacaacctctttctttccaccatgggttccagggattgaagcagaaagt 275

                                                                       
Query: 301 actcttacctgatgagccaccttaccagcccctattttttaaattacattttgttttgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 274 actcttacctgatgagccaccttaccagcccctattttttaaattagattttgttttgtg 215

                                                                       
Query: 361 ggactatatagacaatggctcatgtgtggaactcagaggacaacttttgggaattggctc 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 214 ggactatatagacaatggctcatgtgtggagctcagaggacaacttttgggaattggctc 155

                                                                       
Query: 421 tctccttccaccaccatgtgggacctggaaatcaaattcaggttatcagtcttaggggca 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 154 tctccttccaccaccatgtgggacctgggaatcaaattcaggttatcagtcttaggggca 95

                                                         
Query: 481 agccccgttttactaagtgagtcatcttactggccccttgttttgt 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  agccccgttttactaagtgagtcatcttactggccccttgttttgt 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)