BAC Information

Click to search

BAC

Clone NameMSMg01-309G14
Chromosome6 (Build37)
Map Location 88,019,972 - 88,138,846
singlet/doubletdoublet
Overlap geneRpn1
Upstream geneGfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309G14.T7 (MSMg01no309_g14.b1)MSMg01-309G14.TJ (MSMg01no309_g14.g1)
ACCAG433208AG433209
length743722
length of high quality
(start - end)
312 (46 - 357)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no309_g14.b1 PHD_FILE: MSMg01no309_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:59 2005CHROMAT_FILE: MSMg01no309_g14.g1 PHD_FILE: MSMg01no309_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,138,540 - 88,138,846)(88,019,972 - 88,020,262)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCCATCTTGCTCTCCTAGAGAGGGTCCTGGGTAGCAGTGGGAC
CTGTGGCCCGAGTGGTACTTGAACCACAGGAAACCTCATTATTTAGGTTA
ATTAGACAGAGCAGCCCCAGCCTTGGTGGTCCATTGCTGACTGTGGAGCT
GGGACGGCACACTGCCAAAAGGAGTTTAGCAGGCTCCATTCTGGGGCTTG
GGGCTTGGGAGTAGCTCTGGCCAGGAGTGCTGGGAGTTACCTTAAGTTCT
AGCAGTTTCCTCAGCACTGTTCTGGAAGAGGAGCTGAGTGGGGGCTCCCC
CATCCATATTTCCTTTTTTCTCCCACCCCGCCCCCCACAGACCAAGCCTC
CTAGCTTGGCAGCTTCCCCCCACCTGCTTTCACACTCGGAGCCTCTGGGT
CTGCCTCTGCACTTCTCCTTCCAGGATCCAGGATCGTGGACTGTGGGGCT
TGCGTGTGAGCTTGCCTTTAAACAGCATTTTGTTAGCCTGACTTGACAAT
TGGCAGCCAAAGTCTCCAGCTGGTACCACACCCAATTGTCTGCCAGTTCT
ATATGCGGAGGATCTCATGTTAAGAATTTCGCTTCTTGCATCTTCGCGAA
TTCCTTCTAGACTGGCCACCTTGTGCCTGATTTCTTCAGGCCGATGCACA
GCTGTTAATGCTGCGATCACCTCTGTTTTACTCCTTGCATCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGGAATCAGCATACTGTCATATTAACAC
TTCCAAGATCCTCAAGTGGTATCCGGAATTACCCAACTCGAGAGTGTTCC
AGGAAGTACTCTTTTCTGAGTTGCTGCAGCCAGAAATCCTAGCATTTGGG
TAGGTGGAGGTAAGAGGGTTAGGAGTTAAAGACCAGCTTCCCCTACATTA
CAGACAGCCTGCTTTAAAAGGATGCCCAACTTGTCAAGGGCTCCACACAT
GGGCAATGTGGACAGAGGGTTGAGTCCTTTAGGGCGTAGGACTGATTCCT
CTTTCACAGTATTTGTGACATACAGGACCACCACCAATTCTCAGATCTGT
CTCTCTTTCTGTCTCCCCCCCTGTCTCTCTCTCTGTCTCTTTGCCTGTCT
CTCTCTCTCTCTCTGTCTCTCTCTCTATCTATCTATCTCTCTCTGACACG
AATTACACTGCAGCCCAGGTTGACCTCAAGCTCACAGTTCTCCTGCCTCA
GTCTACAAGTGCTGNAAAAAAAATAAGCATGAGCTCTCAGTCTGATTGCT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGGG
TCGCCAATCGACTTTTATGAATTTACCCCTCTTCTATTTATTTCTCCTCT
TCTATTTTTCACATCACCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_g14.b1 MSMg01no309_g14.b1 CHROMAT_FILE:
MSMg01no309_g14.b1 PHD_FILE: MSMg01no309_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:59 2005
         (312 letters)



>mm_chr6_88138336_88139047
          Length = 712

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccccatcttgctctcctagagagggtcctgggtagcagtgggacctgtggccc 64
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 511 gaattcaccccatcttgctctcctagagctggtcctgggtagcagtgggacctgtggccc 452

                                                                       
Query: 65  gagtggtacttgaaccacaggaaacctcattatttaggttaattagacagagcagcccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gagtggtacttgaaccacaggaaacctcattatttaggttaattagacagagcagcccca 392

                                                                       
Query: 125 gccttggtggtccattgctgactgtggagctgggacggcacactgccaaaaggagtttag 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 391 gccttggtggtccattgctgactgtggagctgggacggcatactgccaaaaggagtttag 332

                                                                       
Query: 185 caggctccattctggggcttggggcttgggagtagctctggccaggagtgctgggagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caggctccattctggggcttggggcttgggagtagctctggccaggagtgctgggagtta 272

                                                                       
Query: 245 ccttaagttctagcagtttcctcagcactgttctggaagaggagctgagtgggggctccc 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 271 ccttaagttctagcagtttcctcagcactgtcctggaagaggagctgagtgggggctccc 212

                  
Query: 305 ccatcca 311
           |||||||
Sbjct: 211 ccatcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no309_g14.g1 MSMg01no309_g14.g1 CHROMAT_FILE:
MSMg01no309_g14.g1 PHD_FILE: MSMg01no309_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:59 2005
         (294 letters)



>mm_chr6_88019772_88020465
          Length = 694

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggaatcagcatactgtcatattaacacttccaagatcctcaagtggtatccggaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 tgaggaatcagcatactgtcatattaacacttccaagatcctcaagtggtatgtggaatt 260

                                                                       
Query: 61  acccaactcgagagtgttccaggaagtactcttttctgagttgctgcagccagaaatcct 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccaacttgagagtgttccaggaagtactcttttctgagttgctgcagccagaaatcct 320

                                                                       
Query: 121 agcatttgggtaggtggaggtaagagggttaggagttaaagaccagcttcccctacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatttgggtaggtggaggtaagagggttaggagttaaagaccagcttcccctacatta 380

                                                                       
Query: 181 cagacagcctgctttaaaaggatgcccaacttgtcaagggctccacacatgggcaatgtg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 cagacagcctgctttaaaaggatgcccaacttgtcaaaggctccacacatgggcaatgtg 440

                                                              
Query: 241 gacagagggttgagtcctttagggcgtaggactgattcctctttcacagta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagagggttgagtcctttagggcgtaggactgattcctctttcacagta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)