BAC Information

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BAC

Clone NameMSMg01-309H21
Chromosome6 (Build37)
Map Location 112,359,544 - 112,517,856
singlet/doubletdoublet
Overlap geneCav3, Oxtr, LOC434076
Upstream geneGrm7, 1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975
Downstream geneEG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309H21.T7 (MSMg01no309_h21.b1)MSMg01-309H21.TJ (MSMg01no309_h21.g1)
ACCAG433267AG433268
length792727
length of high quality
(start - end)		253 (45 - 297)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no309_h21.b1 PHD_FILE: MSMg01no309_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:05 2005CHROMAT_FILE: MSMg01no309_h21.g1 PHD_FILE: MSMg01no309_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,517,614 - 112,517,856)(112,359,544 - 112,359,834)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGGTGTGGGTATTTCTACCTCTCCACCTGGGGATACAACCCCAG
GGATGCTTTTCCATCAGTGGCCAGAATGTAAGAATTGACTCATGCTGGTG
TCTTAGAGACTCTGGAGCCAGCATCCCAGGTGGTGAGGCATGGAGAATCT
GTCCCCTCATGACTTTACTGCCATGGTCTTGTAATCATTATCTAGCAACA
ACTGTCAAATGTTTTGTGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGCC
CCCTTTCCAACCACCATTTTTTTTTCTTTTTTATTTCCTCAACCCCCACA
AATAATTTTTTTAATAATTCCCCCCCCCCCCCCCCCAAGAGAGAGTTTTT
ATTTTTCGGTTCTGGGGGCCCCCCCCCAAAAAAAAAAAAAAACTTTCCGG
GGGGGGGGGGGTTCTTTTTTTTCCCCTCCCCCTTTTCTTTCCCCCCCCAT
TTTATTACCCATTTCCCCCTCCTACCATTCTTTTTTCCCTTCCCCCCCTC
CTATTTTTTTTTTACCTTCCCCCCCCCCCTTTTCCTTTTATTTTTTTCTA
TCTTTCCTTTTCCCATTATCCCCCCCTGCCCCCTATATCCCGACTTTAAC
TTTCCCCCCTTTCCCCGTTATTTTATCCTCCCTCTTTTGTGGTCTCTACG
TTTTCTTTTTTTTTTCTTATTCTTTACTTTTGCTAATATCTTGCCACTTT
TCTTTTTTTCTCTTCTGCCACCTCTTACTTTTTATTTTGTTT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCACAGGAATTCAAATGTTCTTT
TCAGCCAGAATATTGACTTAGTCTGTTTGCTGCTGCTATGACTGCTGTCC
GAGACTGCATAATTTATGAGGAAAGAAGTTTAAATGATTACACATGGTTA
CACATTATCGGGCAGCTGCATCTGGCAAGGCACTAGTACCTGTTTTCATA
ACAGGAAGCAGGAAGGAAAGAGAAAGCATTCCTATAGGGAGAAATGAACC
TTTGCCAGGTCTAATCTTTAGGACTCATCCTCCATGAGCTTCTCCTCCAC
ACCCCTGCCCTCAGTCTCNCTCNATTCTCCACCANCCCTCCATGGAGGAC
TCACAATTCCATCTTATGAACTCTTGATAACAAATATCAGACCACAACAT
TATTGGATGAGAGGGTATAAGCATTACCAAGTCAAAGCACTAACAGATGT
TTATCACTCATGCACTGCACCTATGGATAAAGGTGGGCTGTCATTTCTCA
CCCTATGCAACTCCGAGAAATGGAATAGAGAGATGGTCATGTGTCACAGT
CTCATGGTCATTGTATTCAAAGTTTCACATGCTCCCCTCAGAGTACCAAC
TCTCTTGAGCTGGGCTCCCCAGCAGCAGATACTTGAAGAAAATACAACTG
TGAAGGCTTTTGATGACAAGTAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_h21.b1 MSMg01no309_h21.b1 CHROMAT_FILE:
MSMg01no309_h21.b1 PHD_FILE: MSMg01no309_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:05 2005
         (253 letters)



>mm_chr6_112517430_112518082
          Length = 653

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttggtgtgggtatttctacctctccacctggggatacaaccccagggatgct 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 427 ggaattctttggtgtgggtatttctacctctccacctggggatacaacgccagggatgct 368

                                                                       
Query: 64  tttccatcagtggccagaatgtaagaattgactcatgctggtgtcttagagactctggag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttccatcagtggccagaatgtaagaattgactcatgctggtgtcttagagactctggag 308

                                                                       
Query: 124 ccagcatcccaggtggtgaggcatggagaatctgtcccctcatgactttactgccatggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccagcatcccaggtggtgaggcatggagaatctgtcccctcatgactttactgccatggt 248

                                                                       
Query: 184 cttgtaatcattatctagcaacaactgtcaaatgttttgtggaggtgtgtgtgtgtgtgt 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 247 cttgtaatcattatctagcaacaactgtcaaatattttgtggaggtgtgtgtgtgtgtgt 188

              
Query: 244 gtg 246
           |||
Sbjct: 187 gtg 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no309_h21.g1 MSMg01no309_h21.g1 CHROMAT_FILE:
MSMg01no309_h21.g1 PHD_FILE: MSMg01no309_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:05 2005
         (291 letters)



>mm_chr6_112359344_112360034
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccacaggaattcaaatgttcttttcagccagaatattgacttagtctgtttgctgctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccacaggaattcaaatgttcttttcagccagaatattgacttagtctgtttgctgctgc 260

                                                                       
Query: 61  tatgactgctgtccgagactgcataatttatgaggaaagaagtttaaatgattacacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tatgactgctgtccgagactgcataatttatgaggaaagaagtttaaatgattacacgtg 320

                                                                       
Query: 121 gttacacattatcgggcagctgcatctggcaaggcactagtacctgttttcataacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttacacattatcgggcagctgcatctggcaaggcactagtacctgttttcataacagga 380

                                                                       
Query: 181 agcaggaaggaaagagaaagcattcctatagggagaaatgaacctttgccaggtctaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaggaaggaaagagaaagcattcctatagggagaaatgaacctttgccaggtctaatc 440

                                                              
Query: 241 tttaggactcatcctccatgagcttctcctccacacccctgccctcagtct 291
           ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tttaggactcagcctccatgagcttctcctccacacccctgcccccagtct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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