AAAATTGCGAGCGGTAAGACGANGTCCTAAATGCGNGACCCGTCCGGNGA
GAANACNATTCCTTTCCCCACCACCCGGGCGGNNGCNNAANGAAGNNCAT
AATGAAGGGGGAGGAAAGGCACACACACTGGATGCGCCCCGATGCACCGC
GCACCGGGTATATCACTTCTTATGAACAATCATAGTATAAACCTATAAAC
ACAGAACGCACACTGCATCTCCCACGGCTGGGCGCGCACGCAGTGTGCTT
TCTTCTCGTTCTCTATTTATCTTTCTTCAGTTTCTCCATTGCTGTCTATC
CACGCTAGACTCATCTCGCCCCTCCCCCCACCCGACTCCTGCAATACTCC
AACATTTCTGCAGTTCGCTCACAGTAACTCCGACTTATTATTATTTTTTG
AGCCAGCCCGCAGCCCCCACGCCGCACGAGACCACAAGAAAACATTTTTT
TTTTTTTTCCCCCCCCCCCCCCACCCCCACACGAGGAAGAGACGAAGACC
ACCCGCCCCTAAGGGGTTATACGCCACCCCCACCCAAGAAAACAAAACAG
AAAAGTCAGCCCCCGCCGCGCGGGATCGCGCCCCCAACCAATTACACATT
CACTTCCTGCCACCCCTATAACTGACCCACACGCCTATATGAAGTCCCCC
GCGGACCATTATTACATACCCGACGACGACACGGTACCGTTCTACGCTAA
CATCCCCGCAACGCCACCGCCCCGCCGTTTTGCAATTACCTCGCTCCCCA
TTTGATACTATATCCCCTCATGACCCCCCCTATCGCCCCACCTTTATCTT
AGCCCCTAGAGAGATTATAAGCGCGCTATGCCCAACGCGACAGAATCCCC
ACCTCACTGGTCCTCCTATTGCGCCGTGCTCCACTCCCCCCCACACATCG
CTATCGTTTTACTCATTCTCCCACGCCAGCCACCTCACCCTCCCACACCC
ATCTCTACACCGCCCCCATATTATTCGCTCAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TTAATGGGGTTATTTCATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATA
CTTTTATATATGTTTTGAGAATTGACCATTTAGTATTGGATAACCAATGA
ATGTGAACTTTTAGGGCTGTTTTGCAAAATAATTTCAAAGTCAACTGAAA
GGCCCTTACAACTATCTTCCAACTGGCAAGATTGATATTTATGTTTTCAC
ACTTTTTTTTTTACAGGGTTTCTCAGTGTCGCCTTGGCTGTCCTGGAACT
CACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATACACCTGCCTCTGC
CTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCATCTGATATT
TATGTTTTATCAATGAAACCCTCATGGTATTGATATTTTTTCTTAGATGC
CTAATATCATTTTAATGCTCAAACATTTGTCCAGATTTTAATTTTGTAAC
TACAGATATATTTTCCTTAAATTACTCTTTAATGTGATATGTAGGCCCTC
TTAGATGATGCTAACAGAGCAAGAAAACAAGCATGTGAGTGGTGCAGATA
CAAGATTTCATCATCATTCTTGAGTAATTATCGGTATCTATAATAAACCA
ATTGTGACCATAGTAATATATCCTTGTAAT

Query= MSMg01no309_m01.g1 MSMg01no309_m01.g1 CHROMAT_FILE:
MSMg01no309_m01.g1 PHD_FILE: MSMg01no309_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:25 2005
         (655 letters)



>mm_chr6_110936337_110937391
          Length = 1055

 Score = 1178 bits (609), Expect = 0.0
 Identities = 624/629 (99%), Gaps = 1/629 (0%)
 Strand = Plus / Minus

                                                                        
Query: 28   aatggggttatttcattttctggagtccaccttcttgagttctttatacttttatatatg 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 aatggggttatttcattttctggagtccaccttcttgagttctttatacttttatatatg 996

                                                                        
Query: 88   ttttgagaattgaccatttagtattggataaccaatgaatgtgaacttttagggctgttt 147
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  tcttgagaattgaccatttagtattggataaccaatgaatgtgaacttttagggctgttt 936

                                                                        
Query: 148  tgcaaaataatttcaaagtcaactgaaaggcccttacaactatcttccaactggcaagat 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  tgcaaaataatttcaaagtcaactgaaaggcccttacaactatcttccaactggcaagat 876

                                                                        
Query: 208  tgatatttatgttttcacac-ttttttttttacagggtttctcagtgtcgccttggctgt 266
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 875  tgatatttatgttttcacactttttttttttacagggtttctcagtgtcgccttggctgt 816

                                                                        
Query: 267  cctggaactcactttgtagatcaggctggcctcgaactcagaaatacacctgcctctgcc 326
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 815  cctggaactcactttgtagaccaggctggcctcgaactcagaaatacacctgcctctgcc 756

                                                                        
Query: 327  tcccaagtgctgggattaaaggcgtgcaccaccacgcccatctgatatttatgttttatc 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  tcccaagtgctgggattaaaggcgtgcaccaccacgcccatctgatatttatgttttatc 696

                                                                        
Query: 387  aatgaaaccctcatggtattgatattttttcttagatgcctaatatcattttaatgctca 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  aatgaaaccctcatggtattgatattttttcttagatgcctaatatcattttaatgctca 636

                                                                        
Query: 447  aacatttgtccagattttaattttgtaactacagatatattttccttaaattactcttta 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  aacatttgtccagattttaattttgtaactacagatatattttccttaaattactcttta 576

                                                                        
Query: 507  atgtgatatgtaggccctcttagatgatgctaacagagcaagaaaacaagcatgtgagtg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575  atgtgatatgtaggccctcttagatgatgctaacagagcaagaaaacaagcatgtgagtg 516

                                                                        
Query: 567  gtgcagatacaagatttcatcatcattcttgagtaattatcggtatctataataaaccaa 626
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515  gtgcaaatacaagatttcatcatcattcttgagtaattatcggtatctataataaaccaa 456

                                         
Query: 627  ttgtgaccatagtaatatatccttgtaat 655
            |||||||||||||||||| ||||||||||
Sbjct: 455  ttgtgaccatagtaatatgtccttgtaat 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)