BAC Information

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BAC

Clone NameMSMg01-309M15
Chromosome6 (Build37)
Map Location 58,553,378 - 58,553,692
singlet/doubletsinglet
Overlap geneAbcg2
Upstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
Downstream geneHerc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309M15.T7 (MSMg01no309_m15.b1)MSMg01-309M15.TJ (MSMg01no309_m15.g1)
ACCAG433476AG433477
length749726
length of high quality
(start - end)
312 (46 - 357)592 (129 - 720)
definitionCHROMAT_FILE: MSMg01no309_m15.b1 PHD_FILE: MSMg01no309_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:28 2005CHROMAT_FILE: MSMg01no309_m15.g1 PHD_FILE: MSMg01no309_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACATCCTTAAACCTTGTCACTATCGGATTCTCACCACCACTGCC
ATCTTTGACACTGTCCAGCATGCCTTTTGTCTCAGATCTCAGTAACTCAG
TACACAGATGACCTTCCCAACACTCTTCCCTGCTTCTGTAAAGTTCTCCC
AGGTAATGTCTTGGGGGTTGCCACCCCCATTTTCTCTCCCTTTCCAGTCA
CCATTAGTAACCCAATTCTTCCTCGAGACCCCTCAAGAAGCTGCACACCA
CTCCCTCACTGTGCTGCATCCTGTGTGGTCTTCTTTAGTTCTCATGTTCC
CACGCCTGCTTTTTTTTTACACCCCCCCCCCCGCATTCACACCTCTGAGA
GAACCTAAACTCCCTCTCTCACCTTGAAAAAATCTAAACAAAACCCACTA
ACTCTAACTTCTCTATTTTTTTTTCCATCCTGCATGATACTGGGGATAAT
ATACCAGAATATTGACTCATCTGATTTTAAATTCAGGGTCACGAATTCTG
ATGACTCATTGGTATCCAGCTGAATCTGTATGGCACTTAGCCCTACTCTT
TTGTGTTTTATCGCTCTCTCTCTCCCCGAACCCTGTTTTGTTAACCCTAT
CTTTCACTTTTCCCTTTTCCCCCCCCCTCCCTCTTCTATTTTCTCTATTA
ATACTTCCTCTTTACATTATACCTCTTTTTCCCCCGCCTTTTTATTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAAT
GCAGTGAATGTGACAAATGCTTTACCAAAAAATTCAGTTTGAGGATTCAT
CAGAGAATTCATACAGGAGAGAAACCTTGCAAATGCACTGAATGTGACAA
ATGCTTTACTTTCAAAGGCAGTCTGAGGATTCATCAGAGAATTCATACAG
GAGAGAAACCCTACAAATGTAGTGAATGTGACAAATCCTTTACTGAAAAT
GGCTGTTTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAA
ATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTC
ATCAGAGAATTCATACAGGAGAGAAACCCTACAAATGTAGTGAATGTGAC
AAATCCTTTACTGAAAATGGCTGTTTGAGAATTCATCAGAGAATTCATAC
AGGAGAGAAACCTTACAAATGCACTGAATGTGACAAATGCTTTACTTTCA
AAGGCAGTCTGAAGATTCATCAGAGAATTCATACAGGAGAGAAACCTTAC
AAATGCACTGAATGTGACAAATCCTTTACTGAAAAGGGCAAACTGAGAAT
TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTG
ACAAATGCTTTACTGATTAAGGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_m15.b1 MSMg01no309_m15.b1 CHROMAT_FILE:
MSMg01no309_m15.b1 PHD_FILE: MSMg01no309_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:28 2005
         (312 letters)



>mm_chr6_58553246_58553957
          Length = 712

 Score =  478 bits (247), Expect = e-139
 Identities = 293/315 (93%), Gaps = 11/315 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatccttaaaccttgtcactatcggattctcaccaccactgccatctttgac 64
           ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 447 gaattccacatccttaaactttgtccctatcggagtctcaccaccactgccatctttgac 388

                                                                       
Query: 65  actgtccagcatgccttttgtctcagatctcagtaactcagtacacagatgaccttccca 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 387 actgtccagcatgccttttgtctcagatcttagtaactcagtacacagatgaccttccca 328

                                                                       
Query: 125 acactcttccctgcttctgtaaagttctcccaggtaatgtcttgggggttgccaccccca 184
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 acactcttccctgcttctgcaaagttctcccaggtaatgtcttgggggttgccacctcca 268

                                                                       
Query: 185 ttttctctccctttccagtcaccattagtaacccaattcttcctcgagacccctcaagaa 244
            |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 267 atttctctccctttcaagtcaccattagtaacccaattcttcctggagacccctcaagaa 208

                                                                       
Query: 245 gct-----------gcacaccactccctcactgtgctgcatcctgtgtggtcttctttag 293
           |||           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gctctcaagaacctgctcaccactccctcactgtgctgcatcctgtgtggtcttctttag 148

                          
Query: 294 ttctcatgttcccac 308
           ||| |||||||||||
Sbjct: 147 ttcccatgttcccac 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)