BAC Information

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BAC

Clone NameMSMg01-311D04
Chromosome6 (Build37)
Map Location 147,760,271 - 147,760,577
singlet/doubletsinglet
Overlap genenone
Upstream geneArntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
Downstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311D04.T7 (MSMg01no311_d04.b1)MSMg01-311D04.TJ (MSMg01no311_d04.g1)
ACCAG433768AG433769
length766781
length of high quality
(start - end)
319 (43 - 361)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no311_d04.b1 PHD_FILE: MSMg01no311_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:59 2005CHROMAT_FILE: MSMg01no311_d04.g1 PHD_FILE: MSMg01no311_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTATACACATCTGCAGTTCTGAAAATAAAACCTCCCCCTCTTGGTAAT
GTGTTTGTGGAAATATTCAGCACATAACTGGTGTCAAAGGCTCAATAATC
TAGGTGGGGTGGCTCATAGCATCCTGGTACCTAGGAGCCAGAGGCATGAG
GATTACTGCAGATTTGAGGCCAGCCTCAGCTACAAGGTTGTCAATAAAGC
TGCAAAGCAAGAATTCCTCTAATAAAACAAACAAACAAACAGATAAGATA
TATGGTGTATAGGTAGATAAAAGCTGTCACAAAAATGAATGAATCAGTCA
TTGAAATGGTGTTTGTTGTTTCTCGCCCCCCCCCCTTTTTCTAGAATGAA
AACTACAGATAATGAAGACCCCCTAAAAAAAAAAACATTCTGTGGGAGGG
GGCGCTGTTCCCAAGTAAGCTTACAAGTTGACAAGTCTATGGGATCCACT
GATAACACCCAGAACTGTTGAGCAGCCTTAGCCATTTCCACAGAAGGTTC
CATACATTGCCTCTCTATATTGACCAAGACTGTTTTCCGCCATAAATTCC
CCTAGTTTTTCTAAGCTACCGCCCTTAACCCTGTTAACCCCTCTTTTGTG
ATACTGGTCAAAGGTGTCAGTCTCTATTCGTTCATTCCCCGAGCGGGATT
TTTGTGTATTCTCTCTACCCACTTCCCCCTGTTTTTTCCTAGTTATTATC
AGTGCTGTTTTCTCCN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTTGATTCCCAGTTCCAGGTTAC
AGCTTGGCATGTAATCACAGCTGTGGCATCATGGTGGAGGAATCACATCT
GTAGGGGTGGTGTGGGGCTGGACACGGCATGTCCACAGACATGCAGTCGA
GAGAAGTGAATTCTAGTGCTCAGATTACTTCTGCTTTAGTCTGGACACCT
CTGGCCCTGCCCATGACAATGGTGTTGCCCATGGTTACTGAGTACCTTCC
CAGGCCAATTAACCGAGATGATCCCTCTCCAGCAAGCCAAGAGGCTTGTC
TCCTAAGAGAGTGTATTTTTTTTTTGCCCCCCCCCCCCCCCTCTCACAGT
GAGTTAGCCGTTAAAACTCGTCACCCCTGGTAATACATAAAGACAAACGA
GGGGGGAGGCGTTTTAGAAAGCTACAATTTATTAGCAACATATCTTTTTC
TTATTCTTCCCTCTTTTTTCTCATTAAGCAGAGGACGGATACTCTGTAAG
CTAAATTCTGACCTATGCCGCCAGCTTATAAAAAGTGAGAAAAACTTCGG
TCTGACATCTAGTTTTTGAGACTTTACGCATATTTGTTCTACCTGATTCC
TAATCCACTTCCAATAACCAATAACCGCCACCCCTTTTATTAATTACTGT
AAATATTCACTTCTTCGAAATAATTTGAATACGTCCTTTCCCTGGGGTCG
GGTCCGAATGTTTTTTCCTACCCTTGGGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_d04.b1 MSMg01no311_d04.b1 CHROMAT_FILE:
MSMg01no311_d04.b1 PHD_FILE: MSMg01no311_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:59 2005
         (319 letters)



>mm_chr6_147760271_147760989
          Length = 719

 Score =  555 bits (287), Expect = e-162
 Identities = 303/309 (98%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatacacatctgcagttctgaaaataaaacctccccctcttggtaatgtgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcttatacacatctgcagttctgaaaataaaacctccccctcttggtaatgtgttt 248

                                                                       
Query: 65  gtggaaatattcagcacataactggtgtcaaaggctcaataatctaggtggggtggctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtggaaatattcagcacataactggtgtcaaaggctcaataatctaggtggggtggctca 188

                                                                       
Query: 125 tagcatcctggtacctaggagccagaggcatgaggattactgcagatttgaggccagcct 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 187 tagcatcctggtacctaggagccagaggcatgaggattgctgcagatttgaggccagcct 128

                                                                       
Query: 185 cagctacaaggttgtcaataaagctgcaaagcaagaattcctctaataaaacaaacaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cagctacaaggttgtcaataaagctgcaaagcaagaattcctctaataaaacaaacaaac 68

                                                                       
Query: 245 aaacagataagatatatggtgtataggtagataaaagctgtcacaaaaatgaatgaatca 304
           ||||  ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 67  aaac--ataagatatatggtgtataagtaaataaaagcagtcacaaaaatgaatgaatca 10

                    
Query: 305 gtcattgaa 313
           |||||||||
Sbjct: 9   gtcattgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)