BAC Information

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BAC

Clone NameMSMg01-311M18
Chromosome6 (Build37)
Map Location 48,522,035 - 48,691,964
singlet/doubletdoublet
Overlap geneRarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1
Upstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61
Downstream geneGimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311M18.T7 (MSMg01no311_m18.b1)MSMg01-311M18.TJ (MSMg01no311_m18.g1)
ACCAG434194AG434195
length763739
length of high quality
(start - end)		373 (46 - 418)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no311_m18.b1 PHD_FILE: MSMg01no311_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:45 2005CHROMAT_FILE: MSMg01no311_m18.g1 PHD_FILE: MSMg01no311_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,691,624 - 48,691,964)(48,522,035 - 48,522,320)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTCTTCCCTCTTTCTCCTCGCTTGTCTCAAGCCAGCTCACTC
CTCGTGGTTAATATTTTATTACCTTTTATTTACTTAGGGGGCAAACAGCC
ATGTCCTGTGGAGGCTAAAGGTCGGCTTTCAGGAGTCCGTTCCCTCCCTC
CACCATGTGGGCTCAGAAGCTGAAATCAGCTCATCAGGTTTGGCAGCCTT
TACCCACCCAGTTATCTCCCTGACTCCAAATACTGATACCCAGTTAATTC
CCCATCCTCCTAACACTGGGGACCTGATGAGTGAAGCTCACTCTAGGACT
GGATTTCCCATCCCGTGTCATTTTTGTGGAAACCAGAGTAGGTTTATCCC
TTCATGCTGTGGGAATCCCCCACACCCTGGTCAAAGCTCTGAGCTCCCAG
GTGGGCCCAGTATGTGTGGGTGGATGTGTTGTAAACTCAACCTTTTATTA
TTCTACCCATTAATTCCAATCCACCCTTTCCCTTATCCTTACTCTAACAC
TTTCTCAATCCTCATTTATCTTTCATTTCGACCCATCTCTCTTCCCTCCC
TTTTCAGCTCTTTTTTTCCCTACATATTTCCCGCCTTTTTTCCATCGTTT
AACTCATACCCATTCTAAATATTCCTTTTTTTTTCTCTTACCTTCCTTCC
CCATTTATTCTCCCCTTTCCCTCCCACTCCTTATTTCCTCTTTACTCCTT
ACTTCATCCTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGTCTCCAGGGCTGCAGCTCT
CCACTCTCTACCCAATCACACCACTAACCACTTCTTCAGCTCTGTCCACA
CCGATCTCTTGGAAGGCCAACTGCACAGGTGGGTGTTTGTGGAACTCCTC
CAGAGCCACCTGTAGGCTCCTGCGCTGGGTCTCGCTGAGTTCGGGCTCTG
TCCCACGTGTGCCCACTGTGCCCAGCCATAGGGCTAGGGAGATCAGCAAG
CACTTCATGGCTTCACCTCAGTCCTATGTTTCTGCAAAGATGGTGTGTGG
GCTTTAGTTCTTGTAGCTGNGTTGCCCGNGCCCTCACCTACTCCTAGGGA
CAGAAGTGGCCCTTTCTGACCCCCCCTAAAAAAAAAAATAAAACTAGCGG
GGGCCGTTCTGCAAGGCCTTGTTTCCAAAGAAACTTTGGGGCCAGCAAAG
TTTTAGAGTTCCCTGCCAACAGCCCCGGGAAGTAATCCTGCTGGTTATGT
CCACTATAGCCTTTTTTCTGAGCCATTTTCTCCTCCTTTTGGGTCTTCCC
TCCATATCCCAAATCCCCAGCCTCTTTCTGGAACCTTGAAAATGATCAGG
CTTGCCGCTTCATCGAGTCCTTTTTCTGTGCGTTCCTTGGAACAACTACC
CTGGTAATTCGTTCCCTCCACACCCTTCACATCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_m18.b1 MSMg01no311_m18.b1 CHROMAT_FILE:
MSMg01no311_m18.b1 PHD_FILE: MSMg01no311_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:45 2005
         (373 letters)



>mm_chr6_48691192_48691964
          Length = 773

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 30  ctcgcttgtctcaagccagctcactcctcgtggttaatattttattaccttttatttact 89
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctcgcttgtctcaagccagctccctcctcgtggttaatattttattaccttttatttact 714

                                                                       
Query: 90  tagggggcaaacagccatgtcctgtggaggctaaaggtcggctttcaggagtccgttccc 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tagggggcaaacagccatgtcctgtggaggctaaaggtcggctttcaggagtccgttccc 654

                                                                       
Query: 150 tccctccaccatgtgggctcagaagctgaaatcagctcatcaggtttggcagcctttacc 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tccctccaccatgtgggctcagaagctgaaatcagctcatcaggtttggcagcctttacc 594

                                                                       
Query: 210 cacccagttatctccctgactccaaatactgatacccagttaattccccatcctcctaac 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cacccagttatctccctgactccaaatactgatacccagttaattccccatcctcctaac 534

                                                                       
Query: 270 actggggacctgatgagtgaagctcactctaggactggatttcccatcccgtgtcatttt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actggggacctgatgagtgaagctcactctaggactggatttcccatcccgtgtcatttt 474

                                                    
Query: 330 tgtggaaaccagagtaggtttatcccttcatgctgtgggaa 370
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtggaaaccagagtaggtttatcccttcatgctgtgggaa 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_m18.g1 MSMg01no311_m18.g1 CHROMAT_FILE:
MSMg01no311_m18.g1 PHD_FILE: MSMg01no311_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:45 2005
         (286 letters)



>mm_chr6_48521835_48522520
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggtctccagggctgcagctctccactctctacccaatcacaccactaaccacttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggtctccagggctgcagctctccactctctacccaatcacaccactaaccacttctt 260

                                                                       
Query: 61  cagctctgtccacaccgatctcttggaaggccaactgcacaggtgggtgtttgtggaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctctgtccacaccgatctcttggaaggccaactgcacaggtgggtgtttgtggaact 320

                                                                       
Query: 121 cctccagagccacctgtaggctcctgcgctgggtctcgctgagttcgggctctgtcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccagagccacctgtaggctcctgcgctgggtctcgctgagttcgggctctgtcccac 380

                                                                       
Query: 181 gtgtgcccactgtgcccagccatagggctagggagatcagcaagcacttcatggcttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgcccactgtgcccagccatagggctagggagatcagcaagcacttcatggcttcac 440

                                                         
Query: 241 ctcagtcctatgtttctgcaaagatggtgtgtgggctttagttctt 286
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtcctatggttctgcaaagatggtgtgtgggctttagttctt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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