BAC Information

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BAC

Clone NameMSMg01-312G21
Chromosome6 (Build37)
Map Location 119,682,938 - 119,683,470
singlet/doubletsinglet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312G21.T7 (MSMg01no312_g21.b1)MSMg01-312G21.TJ (MSMg01no312_g21.g1)
ACCAG434650AG434651
length758760
length of high quality
(start - end)
239 (127 - 365)533 (120 - 652)
definitionCHROMAT_FILE: MSMg01no312_g21.b1 PHD_FILE: MSMg01no312_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:30 2005CHROMAT_FILE: MSMg01no312_g21.g1 PHD_FILE: MSMg01no312_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TGAAAAATATCACACAGCATACCCAAACTTATGGGACACAATGAAAGCAG
TGCTAAGAGGAAATTTCTTCCCAGTCAGTGCCCTTGTAAAGAAATTGGAG
AGCTCCTACACTAGCAGCTTAACAGCACACCTGAGAACCCTAGAACAGAA
AGAAGCAAAGGCACCCAAGAGGAGTAGATGGCAAGAAATAATCAAACTCA
GGCTGAAGTCAACCAAATAGAAACAAAAAGAACAATACAAAGAATCAACA
AAACCAAATGTTGGTTCTTTGAAAGAATCAACAAGATAGATAAACCCCTG
GCCAAACTAACTATTGTAGACAGAGAACTCATCCAAATTAACAAAATCAG
AAATGAGAATGGCGACCTAACCACAGAAACGGGGGGAATTAAAAAAATCA
TCAGGCCGGGTGTGGTGGCACATGCCTAACTCACTCTACAAAGCCACTCC
CCACTCCTTGGTGAGCTGTTTTCTTGCTATTCAGCTGCCCATGCTCTCTA
CATACCGAGTCTTATCCCCTCACTCGATGTATGGCTCCACTTTGTGACTT
TTCTCTTTATTCTGGTTTTTCTTTTATTGTAATTTTTCATTTCTAATTTG
TTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGGTGTGTGTGTGGGT
GTGTGTTATAGATAGGGTCTTTCGCTATAGACTTGGCTGCTCTGGAACTC
CCTACATG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTCGAAAATCTTTGGGATCCCACTATTTTATTATCTTTGGTTGC
AGCCACTGAGGATCTACCGGCGTTGGGAGCTTTCTACTAGCTTGCTTTTC
CACTGTTTTTGTGTTTCTATTTTATTATGTGAAGAGATAGGAAGGTTTTT
ACAAGTTTATTTCCCCCACTCAATGGGTAGTTTTCCTTCAGGTTATGATC
TCTACTACTAACAGAGGACAGAAGCAAACAACAGTGAAGAAAGCTGACAA
CAAATCAAATATCAAAGTGAAATAAAAAGCAATTGGGTTCATTTTGGAAC
ATAATCCAAGAATGTAGTCTTGTGGGAAGTCTAAGTACTTGTGAGAAAAT
GCCAAGAAAACACCACCATTTTCCCTGTGCCCTATGCTCTAGTGCTACTT
AGAGTAACTCATTTAAACTTTACATGTGATAATCATCCCAATTTTATAGA
GCAAAACTTACACATCAGAAGCCTATGAAAGCCCAAATAATCTGGGATTA
CTTTTCAATCTGTAGTTCATATAACATAAAGAGACAGGAAGATCAGAAAT
GTAAAACCAATATGGGTTACCTACTTAAATACCCTGTCTAGGAAAAATCA
AACCTAAAGCAAAAGGTCACAGCTAAATATTGTTATTTGGCTGCCTGAAC
CCAGGGCAATCATTTCTTTGTGCCTACTTCCCCATGAGAATAATAACTTC
CCCTGTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_g21.g1 MSMg01no312_g21.g1 CHROMAT_FILE:
MSMg01no312_g21.g1 PHD_FILE: MSMg01no312_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:30 2005
         (533 letters)



>mm_chr6_119682738_119683670
          Length = 933

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/533 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgttgggagctttctactagcttgcttttccactgtttttgtgtttctattttattatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgttgggagctttctactagcttgcttttccactgtttttgtgtttctattttattatg 260

                                                                       
Query: 61  tgaagagataggaaggtttttacaagtttatttcccccactcaatgggtagttttccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagagataggaaggtttttacaagtttatttcccccactcaatgggtagttttccttc 320

                                                                       
Query: 121 aggttatgatctctactactaacagaggacagaagcaaacaacagtgaagaaagctgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttatgatctctactactaacagaggacagaagcaaacaacagtgaagaaagctgaca 380

                                                                       
Query: 181 acaaatcaaatatcaaagtgaaataaaaagcaattgggttcattttggaacataatccaa 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 acaaatcaaatatcaaagtgaaataaaaagcaattgggttgattttggaacataatccaa 440

                                                                       
Query: 241 gaatgtagtcttgtgggaagtctaagtacttgtgagaaaatgccaagaaaacaccaccat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 441 gaatgtagtcttgtgggaagtctaagtacttgtgagaaaatgccaagaaaacaagaccat 500

                                                                       
Query: 301 tttccctgtgccctatgctctagtgctacttagagtaactcatttaaactttacatgtga 360
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tttccctgtgccctacgctctagtgctacttagagtaactcatttaatctttacatgtga 560

                                                                       
Query: 361 taatcatcccaattttatagagcaaaacttacacatcagaagcctatgaaagcccaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcatcccaattttatagagcaaaacttacacatcagaagcctatgaaagcccaaata 620

                                                                       
Query: 421 atctgggattacttttcaatctgtagttcatataacataaagagacaggaagatcagaaa 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctaggattacttttcaatctgtagttcatataacataaagagacaggaagatcagaaa 680

                                                                
Query: 481 tgtaaaaccaatatgggttacctacttaaataccctgtctaggaaaaatcaaa 533
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tgtaaaaccaatatgggttacctacttaaataccctgtctgggaaaaatcaaa 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)