BAC Information

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BAC

Clone NameMSMg01-312K18
Chromosome6 (Build37)
Map Location 57,551,931 - 57,552,561
singlet/doubletsinglet
Overlap geneHerc5
Upstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
Downstream genePigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312K18.T7 (MSMg01no312_k18.b1)MSMg01-312K18.TJ (MSMg01no312_k18.g1)
ACCAG434824AG434825
length7561,016
length of high quality
(start - end)
631 (38 - 668)---
definitionCHROMAT_FILE: MSMg01no312_k18.b1 PHD_FILE: MSMg01no312_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:48 2005CHROMAT_FILE: MSMg01no312_k18.g1 PHD_FILE: MSMg01no312_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAT
GACCTGCATTCATATCACAAGCAAAGTATTCACATAAAAATCAAGGCATT
GCAATGTGCAGTTGTAATACCAGTGCTAGCAATATGGAAATAAAGGATCC
CTTGGGCTCCCTGGTCTGTTGGGATCCCCAGGCAAATGAAAAAGACCCTG
CCTCACAAAACAAGGTGGGTAGCTCCTGAGGTCCAATACCAAAACACCAA
AATGTTATCCGCTGGTCTCCACAAGCACATGCATACACGCACAGACACAG
AAAGAGACACAGACACACACACACAGGTCTTTCTCTTCACAACTAAGATT
AATGTAATTTGAACAATTGATTAATATAGTTCAGACAATTGAGGTTTCCT
AATTTAAGTCATGGCTTTTGAACAACTAAGAAAAATAATAAAATTAAAAA
TGAAAATAATTTGGTGGACATTAAAATAATGTAGGTCAGTGGTGGAGCAC
TTATCTATCACTCCTAAGGTATTGCATTTTATTTATTGAAAATAATTATA
GTTAATAATAATAAATTTTAAAAATTATTTGATGTATCATTTTTTTCTAG
TGCTGAGAATCAACTCTAACACCCAAGCAAACATTCTACCCTTAATACAC
CACCTGGCCCTACAGATTTCAGTTTTTATACCACCAAGAATTATAAAAAT
ACTGTTCTCAGTCTGTATCTTTTGATGATGGGAAGAATCCTCCCTTTCCT
AACATT
CCGTCCGCGCTGTCGGACGCCCGGCCCCCCACCCCCGCGTGCGTTTCCAC
GGTTTTCCCCACGAAGAGGCGGCGGGCGGGGGCGTGTGGGCGCGTTGNAT
AGAAGAGAATNGTTTTGCGGCGGCGCATAGGGGGTGTAGGGATGGGGGGC
AGACGCTCCGCGCCTGGTTGTTTTTCAACTACGAAATAATTCGCGCGTGG
CGTCGACCAATAATATGGTACTTCGTACTTATGCGTAATACGCGATGTGT
TAGCCTTGGGCGCCGGGTCGTCGTCTTTTGTTGGTGGGGTGCCCCGCGTG
TGCGCTCGTGCCGTCTCTTTCAACGCTCGCCGCTTCGATCGCGCGGGCGC
GCGCGAGATGTTTTTTTTTTTCGCGGGCCGGGGCCGCGGCCGTGCACGGC
GGGNAGGGGGATGTTTTGGGGGTGGGGTTTTCCCAANAACAGAGAGCCGC
CGGTTAGGTGTTGTGGGGTGAGTGTTGTGTGGGGGGNGTGCCCCCCCCCG
CGGGACAATTCTTACCTCAAAAAAGGGGGCGGTCCCCGCCTTGGGGCGTA
TAACCTTCTTCACTATCCGTTCCTTTCTATATGCGCCGATGTAGGGCTTC
CGCGATATGTTTGGTTGCGCTGTTATGACTATTTAATCCGATCGGTGTCC
CGTGTGATATGTGGTAGGGTTGGGTTGGGCGGAGGTTGATGTCTCGGGCC
TAGTGAGGATCGTGGATTTATTTTTGTTCCGACACTCGCGGACTCGTTCG
ATAACCGATCCTTTGTTATGGCGCTGTGATTGGGAGACGGTATCGTCGTG
TAGGAGTGCGCGCCCACTCATGTGGCGTTCTTCTCACCGCCTCTCATCCT
TCTTGTGTTTTTGTTGCCCCCGCCCATCTATATCTATTTTATTATTGTTG
ACGTGGGGTGGGCGGACGCCGCATGTAATCGGTGAGCCTTCCTGTGTGTG
CGTCGTCCTCCCTTTGCGATTCCGATATCGTCTCACGTTCCGACCCATCA
CCCACCGTCTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_k18.b1 MSMg01no312_k18.b1 CHROMAT_FILE:
MSMg01no312_k18.b1 PHD_FILE: MSMg01no312_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:48 2005
         (631 letters)



>mm_chr6_57551713_57552747
          Length = 1035

 Score = 1154 bits (597), Expect = 0.0
 Identities = 621/631 (98%), Gaps = 4/631 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgacctgcattcatatcacaagcaaagtattcacataaaaatcaaggcattg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gaattcaatgacctgaattcatatcacaagcaaagtattcacataaaaatcaaggcattg 790

                                                                       
Query: 65  caatgtgcagttgtaataccagtgctagcaatatggaaataaaggatcccttgggctccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 caatgtgcagttgtaataccagtgctagcaatatggaaataaaggatcccttgggctccc 730

                                                                       
Query: 125 tggtctgttgggatccccaggcaaatgaaaaagaccctgcctcacaaaacaaggtgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggtctgttgggatccccaggcaaatgaaaaagaccctgcctcacaaaacaaggtgggta 670

                                                                       
Query: 185 gctcctgaggtccaataccaaaacaccaaaatgttatccgctggtctccacaagcacatg 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gctcctcaggtccaataccaaaacaccaaaatgttatccgctggtctccacaagcacatg 610

                                                                       
Query: 245 catacacgcacagacacagaaagagacacagacacacacacacaggt----ctttctctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 609 catacacgcacagacacagaaagagacacagacacacacacacaggtctacctttctctt 550

                                                                       
Query: 301 cacaactaagattaatgtaatttgaacaattgattaatatagttcagacaattgaggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cacaactaagattaatgtaatttgaacaattgattaatatagttcagacaattgaggttt 490

                                                                       
Query: 361 cctaatttaagtcatggcttttgaacaactaagaaaaataataaaattaaaaatgaaaat 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cctaatttaagtcatggctttagaacaactaagaaaaataataaaattaaaaatgaaaat 430

                                                                       
Query: 421 aatttggtggacattaaaataatgtaggtcagtggtggagcacttatctatcactcctaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 429 aatttggtggacattaaaataatgtaggtcagtggtggagcacttatctagcactcctaa 370

                                                                       
Query: 481 ggtattgcattttatttattgaaaataattatagttaataataataaattttaaaaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggtattgcattttatttattgaaaataattatagttaataataataaattttaaaaatta 310

                                                                       
Query: 541 tttgatgtatcatttttttctagtgctgagaatcaactctaacacccaagcaaacattct 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttggtgtatcatttttttctagtgctgagaatcaactctaacacccaagcaaacattct 250

                                          
Query: 601 acccttaatacaccacctggccctacagatt 631
           |||||||||||||||||||| ||||||||||
Sbjct: 249 acccttaatacaccacctggtcctacagatt 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1035
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1025
Effective search space:   636525
Effective search space used:   636525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)