BAC Information

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BAC

Clone NameMSMg01-312N02
Chromosome6 (Build37)
Map Location 128,743,605 - 128,743,791
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862
Downstream geneKlrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N02.T7 (MSMg01no312_n02.b1)MSMg01-312N02.TJ (MSMg01no312_n02.g1)
ACCAG434929AG434930
length750752
length of high quality
(start - end)
273 (41 - 313)190 (70 - 259)
definitionCHROMAT_FILE: MSMg01no312_n02.b1 PHD_FILE: MSMg01no312_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:59 2005CHROMAT_FILE: MSMg01no312_n02.g1 PHD_FILE: MSMg01no312_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGAAAAACACCAAGCTTACAGCTATAGCATATATACAGAGGGCCTAGTG
CAGACCCATGCAGGCTTCATGACTGCTGCTTCAGGCTCTGTGAGTCCCTA
TGAGCCCTGCTTAGATGATTCTGTGGGCCATGTTCTCCTGGTGTCCTCCA
TGCCTCTGGCTCCCACAATCCTTCCTCTGCCACTTTCATGGGGCTCCTGA
GCTCTGCCTAATGTTTGGCTGTGCGTCTCTGCATCTGCTCTCATTACATG
TTATTGTCTTAAGAAAGGATGGTGTAACATGTGGTCTTCTTTTGTTCTGA
ATCTGGTATTTTTTTTTTTTCCCCCCCCCCCCCTCTTGTGTGCGCCCGAC
TCTTCAGTAAGAACGCCCCCCCCAACAAAAAAAAATAAGAACTATGGTAT
TGGGAGAGCTTGATTCTATATGTTACGATATCCTCAGTTCAGAACTGTTG
CTGCTTATTTTCGCCTATTATACGTGTTGTGTCACACCTGTTATCGCTTA
TGCATGGCTTTTGCCTTATTTCCTCCTTTTGCCTCTCTCACTTCCGACTG
CTTTTCCTTGATTTTCCTTTGATTTGTCTACTTTTCCTTCCCATTTTGAT
TGGTTTTTTTTCCCACCCTTTTCTCGCTTTTATCCCTTTATTTGCTCTCT
CTTTTTTCTCTTCGTCTTTTTCCTACCCTTTTCCCTTATTTTTTCCGCCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTATAAGCGTGGCTGGTCTCAAAGTCAC
TGACCTACCTAAGGTATGCTCTACCACTCCTGGCTTTTGAGAGCACTTTT
GATATACTATGCAAAAGTGGTCAGAGGGATTGACTGGATGGAAAGGGGAG
AAAGAAGAGATGTTTGCCAAGTCTGTTGTTGGTGAACTTGAAGCTGGTAT
ACAGCCAGTGGGAATGCATAATGGCTGAGCTGTTGTGAAGACAGTACGCC
CCATGACTATTGAAGCAAAGATTCAAATGGACTATTGACTATCCAATCCG
TCAATGACATATGCGTGTGTCCCCCCCCCCCCCCGATAGAGAGTACCCAA
GGATCTAGCAATCTGCCCCCCCCCGAAAAAAAAAAAAATGAGAGGGGGGG
GGGGGGAGTCACTGCTTTACTTACTCCCTATAGCCCTCACGGAAGCAACT
ATAATAGCTCGCCTCTTCACTGACATATTGACAGCTAGGCTTGCGCGTAT
AGATTTATATTCTTCAGCTTTATCACTGATTGTCTAGGCTCTGGCCCCTA
TGTACCATGTTGTTCAAGGTGTTACTTTTTTCTTCGCATGATGTGATCTC
ATTTGTTTCATGTCCTATGCATTTAAGCGTCTCTCCTTGCCTTCTTGCTC
TTAAGACCCCGCGTCCTTTTACTCTGCTTTTCGCCACCCCTCTCTCCTTT
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n02.g1 MSMg01no312_n02.g1 CHROMAT_FILE:
MSMg01no312_n02.g1 PHD_FILE: MSMg01no312_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:59 2005
         (190 letters)



>mm_chr6_128743403_128743991
          Length = 589

 Score =  286 bits (148), Expect = 5e-82
 Identities = 178/188 (94%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tctataagcgtggctggtctcaaagtcactgacctacctaaggtatgctctaccactcct 62
           |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct: 389 tctataagcgtggctggtctcaaagttactgacccacctaaggcatgctctaccactcct 330

                                                                       
Query: 63  ggcttttgagagcacttttgatatactatgcaaaagtggtcagagggattgactggatgg 122
           ||  ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 329 gg-gtttgagagcacttttgatatattctgcaaaagtggtcagagggattgactggatgg 271

                                                                       
Query: 123 aaaggggagaaagaagagatgtttgccaagtctgttgttggtgaacttgaagctggtata 182
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct: 270 aaaggggagaaagaagagatgcttgccaaggctgttgttggtgaacttgaagctggttta 211

                   
Query: 183 cagccagt 190
           ||||||||
Sbjct: 210 cagccagt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 589
Length adjustment: 8
Effective length of query: 182
Effective length of database: 581
Effective search space:   105742
Effective search space used:   105742
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)